{"action":"created","issue":{"url":"https://api.github.com/repos/biocore/American-Gut/issues/180","labels_url":"https://api.github.com/repos/biocore/American-Gut/issues/180/labels{/name}","comments_url":"https://api.github.com/repos/biocore/American-Gut/issues/180/comments","events_url":"https://api.github.com/repos/biocore/American-Gut/issues/180/events","html_url":"https://github.com/biocore/American-Gut/issues/180","id":116282555,"number":180,"title":"Conflicting Python resources and virtualenvs","user":{"login":"JWDebelius","id":5534846,"avatar_url":"https://avatars.githubusercontent.com/u/5534846?v=3","gravatar_id":"","url":"https://api.github.com/users/JWDebelius","html_url":"https://github.com/JWDebelius","followers_url":"https://api.github.com/users/JWDebelius/followers","following_url":"https://api.github.com/users/JWDebelius/following{/other_user}","gists_url":"https://api.github.com/users/JWDebelius/gists{/gist_id}","starred_url":"https://api.github.com/users/JWDebelius/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/JWDebelius/subscriptions","organizations_url":"https://api.github.com/users/JWDebelius/orgs","repos_url":"https://api.github.com/users/JWDebelius/repos","events_url":"https://api.github.com/users/JWDebelius/events{/privacy}","received_events_url":"https://api.github.com/users/JWDebelius/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-11-11T07:36:38Z","updated_at":"2015-11-11T14:49:27Z","closed_at":null,"body":"I tried to run Daniel's notebooks tonight (11/10). The ipymd release I got (ipymd==0.1.1) required IPython 4.0 or greater. The code in `mod2_pcoa.py` would not run with IPython > 4.0:\r\n\r\n```\r\nTraceback (most recent call last):\r\n  File \"/Users/jwdebelius/.virtualenvs/test_env/bin/mod2_pcoa.py\", line 4, in <module>\r\n    __import__('pkg_resources').require('americangut==0.0.1')\r\n  File \"/Users/jwdebelius/.virtualenvs/test_env/lib/python2.7/site-packages/pkg_resources/__init__.py\", line 3018, in <module>\r\n    working_set = WorkingSet._build_master()\r\n  File \"/Users/jwdebelius/.virtualenvs/test_env/lib/python2.7/site-packages/pkg_resources/__init__.py\", line 614, in _build_master\r\n    return cls._build_from_requirements(__requires__)\r\n  File \"/Users/jwdebelius/.virtualenvs/test_env/lib/python2.7/site-packages/pkg_resources/__init__.py\", line 627, in _build_from_requirements\r\n    dists = ws.resolve(reqs, Environment())\r\n  File \"/Users/jwdebelius/.virtualenvs/test_env/lib/python2.7/site-packages/pkg_resources/__init__.py\", line 805, in resolve\r\n    raise DistributionNotFound(req)\r\npkg_resources.DistributionNotFound: IPython<4.0.0\r\n```\r\n\r\nI did downgrade my matplotlib to 1.4, and this is a function which calls seaborn, but the error isn't related to those packages."},"comment":{"url":"https://api.github.com/repos/biocore/American-Gut/issues/comments/155801977","html_url":"https://github.com/biocore/American-Gut/issues/180#issuecomment-155801977","issue_url":"https://api.github.com/repos/biocore/American-Gut/issues/180","id":155801977,"user":{"login":"wasade","id":474290,"avatar_url":"https://avatars.githubusercontent.com/u/474290?v=3","gravatar_id":"","url":"https://api.github.com/users/wasade","html_url":"https://github.com/wasade","followers_url":"https://api.github.com/users/wasade/followers","following_url":"https://api.github.com/users/wasade/following{/other_user}","gists_url":"https://api.github.com/users/wasade/gists{/gist_id}","starred_url":"https://api.github.com/users/wasade/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wasade/subscriptions","organizations_url":"https://api.github.com/users/wasade/orgs","repos_url":"https://api.github.com/users/wasade/repos","events_url":"https://api.github.com/users/wasade/events{/privacy}","received_events_url":"https://api.github.com/users/wasade/received_events","type":"User","site_admin":false},"created_at":"2015-11-11T14:49:26Z","updated_at":"2015-11-11T14:49:26Z","body":"I thought setup.py specified IPython<4.0.0?\nOn Nov 10, 2015 11:36 PM, \"J W Debelius\" <notifications@github.com> wrote:\n\n> I tried to run Daniel's notebooks tonight (11/10). The ipymd release I got\n> (ipymd==0.1.1) required IPython 4.0 or greater. The code in mod2_pcoa.py\n> would not run with IPython > 4.0:\n>\n> Traceback (most recent call last):\n>   File \"/Users/jwdebelius/.virtualenvs/test_env/bin/mod2_pcoa.py\", line 4, in <module>\n>     __import__('pkg_resources').require('americangut==0.0.1')\n>   File \"/Users/jwdebelius/.virtualenvs/test_env/lib/python2.7/site-packages/pkg_resources/__init__.py\", line 3018, in <module>\n>     working_set = WorkingSet._build_master()\n>   File \"/Users/jwdebelius/.virtualenvs/test_env/lib/python2.7/site-packages/pkg_resources/__init__.py\", line 614, in _build_master\n>     return cls._build_from_requirements(__requires__)\n>   File \"/Users/jwdebelius/.virtualenvs/test_env/lib/python2.7/site-packages/pkg_resources/__init__.py\", line 627, in _build_from_requirements\n>     dists = ws.resolve(reqs, Environment())\n>   File \"/Users/jwdebelius/.virtualenvs/test_env/lib/python2.7/site-packages/pkg_resources/__init__.py\", line 805, in resolve\n>     raise DistributionNotFound(req)\n> pkg_resources.DistributionNotFound: IPython<4.0.0\n>\n> I did downgrade my matplotlib to 1.4, and this is a function which calls\n> seaborn, but the error isn't related to those packages.\n>\n> —\n> Reply to this email directly or view it on GitHub\n> <https://github.com/biocore/American-Gut/issues/180>.\n>\n"}}