{"action":"created","comment":{"url":"https://api.github.com/repos/biocore/basespace-qiime/pulls/comments/31192891","id":31192891,"diff_hunk":"@@ -0,0 +1,21 @@\n+FROM ubuntu:14.04\n+#QIIME basic installation env v0.1 \n+MAINTAINER Chester Kuo <chester.kuo@gmail.com>\n+\n+RUN apt-get update && apt-get -y install curl\n+RUN apt-get -y --no-install-recommends install cmake mercurial git make subversion\n+RUN apt-get -y install gcc g++ gdb\n+RUN apt-get -y install python python-dev python-pip vim\n+RUN apt-get -y install pkg-config libpng-dev libfreetype6-dev\n+RUN apt-get -y install libopenblas-base libopenblas-dev libatlas-base-dev gfortran libblas-dev liblapack-dev mklibs\n+\n+RUN mkdir -p /tmp","path":"docker/Dockerfile","position":12,"original_position":12,"commit_id":"bb929ae6851b5a9005d6c7825527d0cf41ee23c1","original_commit_id":"bb929ae6851b5a9005d6c7825527d0cf41ee23c1","user":{"login":"ElDeveloper","id":375307,"avatar_url":"https://avatars.githubusercontent.com/u/375307?v=3","gravatar_id":"","url":"https://api.github.com/users/ElDeveloper","html_url":"https://github.com/ElDeveloper","followers_url":"https://api.github.com/users/ElDeveloper/followers","following_url":"https://api.github.com/users/ElDeveloper/following{/other_user}","gists_url":"https://api.github.com/users/ElDeveloper/gists{/gist_id}","starred_url":"https://api.github.com/users/ElDeveloper/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ElDeveloper/subscriptions","organizations_url":"https://api.github.com/users/ElDeveloper/orgs","repos_url":"https://api.github.com/users/ElDeveloper/repos","events_url":"https://api.github.com/users/ElDeveloper/events{/privacy}","received_events_url":"https://api.github.com/users/ElDeveloper/received_events","type":"User","site_admin":false},"body":"Sounds like a reasonable suggestion, but I guess the real location where\nwe would want the temp folder, is wherever the EC2 instance running this\ndocker image has some scratch space, right?. I'll have to check the\ndocumentation and see if I can find something about this.\n\nOn (May-27-15|16:46), Greg Caporaso wrote:\n> > @@ -0,0 +1,21 @@\n> > +FROM ubuntu:14.04\n> > +#QIIME basic installation env v0.1 \n> > +MAINTAINER Chester Kuo <chester.kuo@gmail.com>\n> > +\n> > +RUN apt-get update && apt-get -y install curl\n> > +RUN apt-get -y --no-install-recommends install cmake mercurial git make subversion\n> > +RUN apt-get -y install gcc g++ gdb\n> > +RUN apt-get -y install python python-dev python-pip vim\n> > +RUN apt-get -y install pkg-config libpng-dev libfreetype6-dev\n> > +RUN apt-get -y install libopenblas-base libopenblas-dev libatlas-base-dev gfortran libblas-dev liblapack-dev mklibs\n> > +\n> > +RUN mkdir -p /tmp\n> \n> Maybe a different directory? For example, ``$HOME/temp``, and then set that in the qiime_config, which you could do with:\n> \n> ```bash\n> echo \"temp_dir $HOME/temp\" > $HOME/.qiime_config\n> ```\n> \n> ---\n> Reply to this email directly or view it on GitHub:\n> https://github.com/biocore/basespace-qiime/pull/2/files#r31192078\n","created_at":"2015-05-28T00:00:53Z","updated_at":"2015-05-28T00:00:53Z","html_url":"https://github.com/biocore/basespace-qiime/pull/2#discussion_r31192891","pull_request_url":"https://api.github.com/repos/biocore/basespace-qiime/pulls/2","_links":{"self":{"href":"https://api.github.com/repos/biocore/basespace-qiime/pulls/comments/31192891"},"html":{"href":"https://github.com/biocore/basespace-qiime/pull/2#discussion_r31192891"},"pull_request":{"href":"https://api.github.com/repos/biocore/basespace-qiime/pulls/2"}}},"pull_request":{"url":"https://api.github.com/repos/biocore/basespace-qiime/pulls/2","id":36350308,"html_url":"https://github.com/biocore/basespace-qiime/pull/2","diff_url":"https://github.com/biocore/basespace-qiime/pull/2.diff","patch_url":"https://github.com/biocore/basespace-qiime/pull/2.patch","issue_url":"https://api.github.com/repos/biocore/basespace-qiime/issues/2","number":2,"state":"closed","locked":false,"title":"ENH: Add Dockerfile and shell scripts","user":{"login":"ElDeveloper","id":375307,"avatar_url":"https://avatars.githubusercontent.com/u/375307?v=3","gravatar_id":"","url":"https://api.github.com/users/ElDeveloper","html_url":"https://github.com/ElDeveloper","followers_url":"https://api.github.com/users/ElDeveloper/followers","following_url":"https://api.github.com/users/ElDeveloper/following{/other_user}","gists_url":"https://api.github.com/users/ElDeveloper/gists{/gist_id}","starred_url":"https://api.github.com/users/ElDeveloper/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ElDeveloper/subscriptions","organizations_url":"https://api.github.com/users/ElDeveloper/orgs","repos_url":"https://api.github.com/users/ElDeveloper/repos","events_url":"https://api.github.com/users/ElDeveloper/events{/privacy}","received_events_url":"https://api.github.com/users/ElDeveloper/received_events","type":"User","site_admin":false},"body":"This is the Dockerfile that powers the Docker image for QIIME running on\r\nBaseSpace, the shell scripts are used by the callback.js files to start\r\nthe processing of the data.\r\n\r\n@chesterkuo, the Dockerfile included here is part of your repository found in https://github.com/chesterkuo/docker-gpgpu , are you OK with us redistributing\r\nthe file under the BSD-2 license? I couldn't find a license in your 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