{"action":"opened","issue":{"url":"https://api.github.com/repos/zhanglab/psamm/issues/30","labels_url":"https://api.github.com/repos/zhanglab/psamm/issues/30/labels{/name}","comments_url":"https://api.github.com/repos/zhanglab/psamm/issues/30/comments","events_url":"https://api.github.com/repos/zhanglab/psamm/issues/30/events","html_url":"https://github.com/zhanglab/psamm/issues/30","id":105903294,"number":30,"title":"Rename --reaction options to --objective","user":{"login":"jonls","id":420734,"avatar_url":"https://avatars.githubusercontent.com/u/420734?v=3","gravatar_id":"","url":"https://api.github.com/users/jonls","html_url":"https://github.com/jonls","followers_url":"https://api.github.com/users/jonls/followers","following_url":"https://api.github.com/users/jonls/following{/other_user}","gists_url":"https://api.github.com/users/jonls/gists{/gist_id}","starred_url":"https://api.github.com/users/jonls/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jonls/subscriptions","organizations_url":"https://api.github.com/users/jonls/orgs","repos_url":"https://api.github.com/users/jonls/repos","events_url":"https://api.github.com/users/jonls/events{/privacy}","received_events_url":"https://api.github.com/users/jonls/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-09-10T21:40:33Z","updated_at":"2015-09-10T21:40:33Z","closed_at":null,"body":"For `fba`, `robustness`, `fva` and similar commands there is an option called `--reaction` to select a different reaction to optimize than the biomass reaction specified in `model.yaml`. The name of this option is not very descriptive. `--objective` seems to be a better choice.\r\n\r\nOther options: `--maximize`, `--optimize`, `--biomass`..."}}