{"action":"created","issue":{"url":"https://api.github.com/repos/DistanceDevelopment/mrds/issues/3","labels_url":"https://api.github.com/repos/DistanceDevelopment/mrds/issues/3/labels{/name}","comments_url":"https://api.github.com/repos/DistanceDevelopment/mrds/issues/3/comments","events_url":"https://api.github.com/repos/DistanceDevelopment/mrds/issues/3/events","html_url":"https://github.com/DistanceDevelopment/mrds/issues/3","id":94931077,"number":3,"title":"Computation time for mrds full independence fit of crabeater seals","user":{"login":"erex","id":330744,"avatar_url":"https://avatars.githubusercontent.com/u/330744?v=3","gravatar_id":"","url":"https://api.github.com/users/erex","html_url":"https://github.com/erex","followers_url":"https://api.github.com/users/erex/followers","following_url":"https://api.github.com/users/erex/following{/other_user}","gists_url":"https://api.github.com/users/erex/gists{/gist_id}","starred_url":"https://api.github.com/users/erex/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/erex/subscriptions","organizations_url":"https://api.github.com/users/erex/orgs","repos_url":"https://api.github.com/users/erex/repos","events_url":"https://api.github.com/users/erex/events{/privacy}","received_events_url":"https://api.github.com/users/erex/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":5,"created_at":"2015-07-14T12:07:46Z","updated_at":"2015-07-14T19:08:33Z","closed_at":null,"body":"Running mrds analysis of crabeaters (3480 detections) with this set of covariates\r\n```\r\nddf.1<-ddf(method='fiio',dsmodel=~cds(key='hn'),mrmodel=~glm(link='logit',formula=~observer+distance+ gscat + fatigue+ obsname + exp + ssmi + side + distance:obsname  + distance:observer + vis\r\n),data=ddf.dat.1,meta.data=list(width=700))\r\n\r\n```\r\nhas now been running for 43 minutes.  I believe comparable previous computation time was ~10sec\r\n\r\nPerhaps the comment you made on the weekend about \"now MRDS does the actual integration...\" might be responsible??\r\n"},"comment":{"url":"https://api.github.com/repos/DistanceDevelopment/mrds/issues/comments/121344624","html_url":"https://github.com/DistanceDevelopment/mrds/issues/3#issuecomment-121344624","issue_url":"https://api.github.com/repos/DistanceDevelopment/mrds/issues/3","id":121344624,"user":{"login":"dill","id":1953,"avatar_url":"https://avatars.githubusercontent.com/u/1953?v=3","gravatar_id":"","url":"https://api.github.com/users/dill","html_url":"https://github.com/dill","followers_url":"https://api.github.com/users/dill/followers","following_url":"https://api.github.com/users/dill/following{/other_user}","gists_url":"https://api.github.com/users/dill/gists{/gist_id}","starred_url":"https://api.github.com/users/dill/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dill/subscriptions","organizations_url":"https://api.github.com/users/dill/orgs","repos_url":"https://api.github.com/users/dill/repos","events_url":"https://api.github.com/users/dill/events{/privacy}","received_events_url":"https://api.github.com/users/dill/received_events","type":"User","site_admin":false},"created_at":"2015-07-14T19:08:33Z","updated_at":"2015-07-14T19:08:33Z","body":"I rolled back to afa62b9355a7a549f93d6c1e7e2c9cd6ad6bb92e and the `summary` still takes a long time.\r\n\r\nIt's therefore possible that:\r\n 1. this model didn't get fitted last time,\r\n 2. it did get fitted but the run time went unnoticed,\r\n 3. there has been some change in R or other underlying code that is causing the slowdown.\r\n\r\nAny thoughts?\r\n"}}