{"action":"created","issue":{"url":"https://api.github.com/repos/mwpennell/phyndr-ms/issues/31","labels_url":"https://api.github.com/repos/mwpennell/phyndr-ms/issues/31/labels{/name}","comments_url":"https://api.github.com/repos/mwpennell/phyndr-ms/issues/31/comments","events_url":"https://api.github.com/repos/mwpennell/phyndr-ms/issues/31/events","html_url":"https://github.com/mwpennell/phyndr-ms/issues/31","id":111292524,"number":31,"title":"vignette not building for me","user":{"login":"wcornwell","id":5534161,"avatar_url":"https://avatars.githubusercontent.com/u/5534161?v=3","gravatar_id":"","url":"https://api.github.com/users/wcornwell","html_url":"https://github.com/wcornwell","followers_url":"https://api.github.com/users/wcornwell/followers","following_url":"https://api.github.com/users/wcornwell/following{/other_user}","gists_url":"https://api.github.com/users/wcornwell/gists{/gist_id}","starred_url":"https://api.github.com/users/wcornwell/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wcornwell/subscriptions","organizations_url":"https://api.github.com/users/wcornwell/orgs","repos_url":"https://api.github.com/users/wcornwell/repos","events_url":"https://api.github.com/users/wcornwell/events{/privacy}","received_events_url":"https://api.github.com/users/wcornwell/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":5,"created_at":"2015-10-13T23:30:20Z","updated_at":"2015-10-21T01:48:16Z","closed_at":null,"body":"After calling `remake::make`:\r\n\r\n```R\r\n[    OK ] source_data/zanne.tre\r\n[  KNIT ] vignette/vignette.md            |  knitr::knit(\"vignette/vignette.Rmd\", \"vignette/vignette.md\")\r\nQuitting from lines 143-145 (vignette.Rmd) \r\nRestoring previous version of vignette/vignette.md\r\nError in phyndr_taxonomy_cleanup(phy2, data_species2) : \r\n  Zero overlap in data_species and phy\r\nIn addition: Warning message:\r\nIn file.create(to[okay]) :\r\n  cannot create file 'vignette/vignette.md', reason 'No such file or directory'\r\n```"},"comment":{"url":"https://api.github.com/repos/mwpennell/phyndr-ms/issues/comments/149755024","html_url":"https://github.com/mwpennell/phyndr-ms/issues/31#issuecomment-149755024","issue_url":"https://api.github.com/repos/mwpennell/phyndr-ms/issues/31","id":149755024,"user":{"login":"wcornwell","id":5534161,"avatar_url":"https://avatars.githubusercontent.com/u/5534161?v=3","gravatar_id":"","url":"https://api.github.com/users/wcornwell","html_url":"https://github.com/wcornwell","followers_url":"https://api.github.com/users/wcornwell/followers","following_url":"https://api.github.com/users/wcornwell/following{/other_user}","gists_url":"https://api.github.com/users/wcornwell/gists{/gist_id}","starred_url":"https://api.github.com/users/wcornwell/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wcornwell/subscriptions","organizations_url":"https://api.github.com/users/wcornwell/orgs","repos_url":"https://api.github.com/users/wcornwell/repos","events_url":"https://api.github.com/users/wcornwell/events{/privacy}","received_events_url":"https://api.github.com/users/wcornwell/received_events","type":"User","site_admin":false},"created_at":"2015-10-21T01:48:16Z","updated_at":"2015-10-21T01:48:16Z","body":"I think I fixed it here: 430e30bf67441f73a9bc91bb2a1f9d541b266652 \r\n\r\ncheck out to make sure it works for you"}}