{"push_id":558810286,"size":4,"distinct_size":4,"ref":"refs/heads/master","head":"2cb1a92466972c81d141b28c07ec11f8cc9e4f94","before":"4ceda8bc56516d2160e9dfe0f665667c516da1aa","commits":[{"sha":"f485d49d3d49133acbc9468a0d8dd80fd78d6ce3","author":{"email":"4f3407de78bccc8cc160ee4d278d5efe7162e6b5@bx.psu.edu","name":"Nate Coraor"},"message":"Allow BAM's set_meta() to use samtools 1 to generate the index, if the samtools found on $PATH is samtools 1.","distinct":true,"url":"https://api.github.com/repos/jmchilton/galaxy-central/commits/f485d49d3d49133acbc9468a0d8dd80fd78d6ce3"},{"sha":"1bd39d19ec86a30ecf707e44f87639a0088f80f5","author":{"email":"4f3407de78bccc8cc160ee4d278d5efe7162e6b5@bx.psu.edu","name":"Nate Coraor"},"message":"Use a symlink to the dataset in the same directory as the MetadataTempFile as the input to samtools index so there's no clobber risk. Thanks Dan.","distinct":true,"url":"https://api.github.com/repos/jmchilton/galaxy-central/commits/1bd39d19ec86a30ecf707e44f87639a0088f80f5"},{"sha":"1a3dadf8b0c785727db93915f3620ed2f6a792c3","author":{"email":"4f3407de78bccc8cc160ee4d278d5efe7162e6b5@bx.psu.edu","name":"Nate Coraor"},"message":"Use subprocess.call() rather than Popen(), thanks Nicola.","distinct":true,"url":"https://api.github.com/repos/jmchilton/galaxy-central/commits/1a3dadf8b0c785727db93915f3620ed2f6a792c3"},{"sha":"2cb1a92466972c81d141b28c07ec11f8cc9e4f94","author":{"email":"4f3407de78bccc8cc160ee4d278d5efe7162e6b5@bx.psu.edu","name":"Nate Coraor"},"message":"Merged in natefoo/galaxy-central/samtools1_bam_index (pull request #651)\n\nAllow BAM's set_meta() to use samtools 1 to generate the index, if the samtools found on $PATH is samtools 1.","distinct":true,"url":"https://api.github.com/repos/jmchilton/galaxy-central/commits/2cb1a92466972c81d141b28c07ec11f8cc9e4f94"}]}