{"action":"created","issue":{"url":"https://api.github.com/repos/bigdatagenomics/bdg-formats/issues/51","labels_url":"https://api.github.com/repos/bigdatagenomics/bdg-formats/issues/51/labels{/name}","comments_url":"https://api.github.com/repos/bigdatagenomics/bdg-formats/issues/51/comments","events_url":"https://api.github.com/repos/bigdatagenomics/bdg-formats/issues/51/events","html_url":"https://github.com/bigdatagenomics/bdg-formats/pull/51","id":66201312,"number":51,"title":"Clean up VariantCallingAnnotations","user":{"login":"fnothaft","id":3752466,"avatar_url":"https://avatars.githubusercontent.com/u/3752466?v=3","gravatar_id":"","url":"https://api.github.com/users/fnothaft","html_url":"https://github.com/fnothaft","followers_url":"https://api.github.com/users/fnothaft/followers","following_url":"https://api.github.com/users/fnothaft/following{/other_user}","gists_url":"https://api.github.com/users/fnothaft/gists{/gist_id}","starred_url":"https://api.github.com/users/fnothaft/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fnothaft/subscriptions","organizations_url":"https://api.github.com/users/fnothaft/orgs","repos_url":"https://api.github.com/users/fnothaft/repos","events_url":"https://api.github.com/users/fnothaft/events{/privacy}","received_events_url":"https://api.github.com/users/fnothaft/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/bigdatagenomics/bdg-formats/milestones/2","html_url":"https://github.com/bigdatagenomics/bdg-formats/milestones/0.6.0","labels_url":"https://api.github.com/repos/bigdatagenomics/bdg-formats/milestones/2/labels","id":1220592,"number":2,"title":"0.6.0","description":"","creator":{"login":"fnothaft","id":3752466,"avatar_url":"https://avatars.githubusercontent.com/u/3752466?v=3","gravatar_id":"","url":"https://api.github.com/users/fnothaft","html_url":"https://github.com/fnothaft","followers_url":"https://api.github.com/users/fnothaft/followers","following_url":"https://api.github.com/users/fnothaft/following{/other_user}","gists_url":"https://api.github.com/users/fnothaft/gists{/gist_id}","starred_url":"https://api.github.com/users/fnothaft/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fnothaft/subscriptions","organizations_url":"https://api.github.com/users/fnothaft/orgs","repos_url":"https://api.github.com/users/fnothaft/repos","events_url":"https://api.github.com/users/fnothaft/events{/privacy}","received_events_url":"https://api.github.com/users/fnothaft/received_events","type":"User","site_admin":false},"open_issues":1,"closed_issues":3,"state":"open","created_at":"2015-07-22T16:09:34Z","updated_at":"2015-07-22T16:17:09Z","due_on":"2015-07-29T07:00:00Z","closed_at":null},"comments":4,"created_at":"2015-04-03T18:13:15Z","updated_at":"2015-07-22T16:29:16Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/bigdatagenomics/bdg-formats/pulls/51","html_url":"https://github.com/bigdatagenomics/bdg-formats/pull/51","diff_url":"https://github.com/bigdatagenomics/bdg-formats/pull/51.diff","patch_url":"https://github.com/bigdatagenomics/bdg-formats/pull/51.patch"},"body":"Cleans up and adds documentation to the `VariantCallingAnnotation` class. Also makes a bit of cleanup to `Variant` and `Genotype`. Specifically:\r\n\r\n* Promote variant quality to the `Variant` object, instead of the `VariantCallingAnnotation` object\r\n* Convert all Phred scaled fields from `int` to `float`\r\n* Pruned a few fields; these were GATK fields that are underdocumented and possibly deprecated (e.g., haplotypeScore). These can still be stored in the tag map."},"comment":{"url":"https://api.github.com/repos/bigdatagenomics/bdg-formats/issues/comments/123780930","html_url":"https://github.com/bigdatagenomics/bdg-formats/pull/51#issuecomment-123780930","issue_url":"https://api.github.com/repos/bigdatagenomics/bdg-formats/issues/51","id":123780930,"user":{"login":"arahuja","id":455755,"avatar_url":"https://avatars.githubusercontent.com/u/455755?v=3","gravatar_id":"","url":"https://api.github.com/users/arahuja","html_url":"https://github.com/arahuja","followers_url":"https://api.github.com/users/arahuja/followers","following_url":"https://api.github.com/users/arahuja/following{/other_user}","gists_url":"https://api.github.com/users/arahuja/gists{/gist_id}","starred_url":"https://api.github.com/users/arahuja/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/arahuja/subscriptions","organizations_url":"https://api.github.com/users/arahuja/orgs","repos_url":"https://api.github.com/users/arahuja/repos","events_url":"https://api.github.com/users/arahuja/events{/privacy}","received_events_url":"https://api.github.com/users/arahuja/received_events","type":"User","site_admin":false},"created_at":"2015-07-22T16:29:16Z","updated_at":"2015-07-22T16:29:16Z","body":"Is there a reason Phred-scaled values should be floats instead of int?"}}