{"action":"created","issue":{"url":"https://api.github.com/repos/opencobra/cobratoolbox/issues/79","labels_url":"https://api.github.com/repos/opencobra/cobratoolbox/issues/79/labels{/name}","comments_url":"https://api.github.com/repos/opencobra/cobratoolbox/issues/79/comments","events_url":"https://api.github.com/repos/opencobra/cobratoolbox/issues/79/events","html_url":"https://github.com/opencobra/cobratoolbox/issues/79","id":112794883,"number":79,"title":"problem with Cobra testAll testModels (forwarded by Dr. Ronan M.T. Fleming)","user":{"login":"longfeimao","id":9161887,"avatar_url":"https://avatars.githubusercontent.com/u/9161887?v=3","gravatar_id":"","url":"https://api.github.com/users/longfeimao","html_url":"https://github.com/longfeimao","followers_url":"https://api.github.com/users/longfeimao/followers","following_url":"https://api.github.com/users/longfeimao/following{/other_user}","gists_url":"https://api.github.com/users/longfeimao/gists{/gist_id}","starred_url":"https://api.github.com/users/longfeimao/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/longfeimao/subscriptions","organizations_url":"https://api.github.com/users/longfeimao/orgs","repos_url":"https://api.github.com/users/longfeimao/repos","events_url":"https://api.github.com/users/longfeimao/events{/privacy}","received_events_url":"https://api.github.com/users/longfeimao/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-10-22T12:43:40Z","updated_at":"2015-10-22T14:25:15Z","closed_at":null,"body":"Dear Dr. Fleming,\r\n\r\n \r\n\r\nWe will be using the Cobra for Matlab toolbox for a course in the Biomedical Engineering bachelor program of the Eindhoven University of Technology in The Netherlands, and for this I’m testing the installation. I have downloaded the version from your website http://opencobra.github.io/cobratoolbox/.\r\n\r\n \r\n\r\nAfter installing Gurobi, and after initializing Cobra, I run testAll. This gives an error message somewhere half way. I found out that the problem is with testModels. I have noticed three things with this:\r\n\r\n-          The folder testModels did not exist with previous versions of Cobra.\r\n\r\n-          testModels is not a function, like the functions in the other testing folders\r\n\r\n-          the second line of testModels.m states “if 1 %by default, do not run this script with testAll”.\r\n\r\n \r\n\r\nCould you give me a suggestion how I can easily (and easily reproducible by our students) change either testAll, or testModels so that we can at least run all the tests?\r\n\r\n \r\n\r\nOr, could you update the version on your website so that we (and others!) don’t run into this problem again?\r\n\r\n \r\n\r\nThanks.\r\n\r\n \r\n\r\nKind regards,\r\n\r\n \r\n\r\nSilvia\r\n\r\n \r\n\r\ncid:image001.png@01D06D37.B6C75510\r\n\r\nS. Wognum \r\nLecturer\r\nDepartment of Biomedical Engineering\r\n\r\nNavigation address: De Zaale, Eindhoven\r\nGemini Zuid 3.106, Groene Loper \r\nP.O. Box 513, 5600 MB Eindhoven\r\nThe Netherlands\r\n\r\nT +31 (0)40 247 2516\r\ns.wognum@tue.nl\r\n"},"comment":{"url":"https://api.github.com/repos/opencobra/cobratoolbox/issues/comments/150240295","html_url":"https://github.com/opencobra/cobratoolbox/issues/79#issuecomment-150240295","issue_url":"https://api.github.com/repos/opencobra/cobratoolbox/issues/79","id":150240295,"user":{"login":"longfeimao","id":9161887,"avatar_url":"https://avatars.githubusercontent.com/u/9161887?v=3","gravatar_id":"","url":"https://api.github.com/users/longfeimao","html_url":"https://github.com/longfeimao","followers_url":"https://api.github.com/users/longfeimao/followers","following_url":"https://api.github.com/users/longfeimao/following{/other_user}","gists_url":"https://api.github.com/users/longfeimao/gists{/gist_id}","starred_url":"https://api.github.com/users/longfeimao/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/longfeimao/subscriptions","organizations_url":"https://api.github.com/users/longfeimao/orgs","repos_url":"https://api.github.com/users/longfeimao/repos","events_url":"https://api.github.com/users/longfeimao/events{/privacy}","received_events_url":"https://api.github.com/users/longfeimao/received_events","type":"User","site_admin":false},"created_at":"2015-10-22T14:25:15Z","updated_at":"2015-10-22T14:25:15Z","body":"Dear Dr. Silvia Wognum\r\n\r\nThank you for pointing out the issue to us. We have fixed it and updated the COBRA toolbox :)\r\n\r\nBest wishes \r\n \r\nLongfei Mao, Ph.D.\r\n-----------------------------------------------------------------------------------\r\nResearch Associate (Collaborateur Scientifique)\r\nSystems Biochemistry Group,\r\nLuxembourg Centre for Systems Biomedicine \r\n\r\nUNIVERSITY OF LUXEMBOURG\r\nCAMPUS BELVAL\r\n\r\nHouse of Biomedicine II \r\n6, avenue du Swing \r\nL-4367 Belvaux\r\n\r\nT +352 46 66 44 5514\r\nF +352 46 66 44 35514\r\n-----------------------------------------------------------------------------------\r\n \r\nhttp://wwwen.uni.lu/lcsb/research/systems_biochemistry\r\n \r\nlongfeimao99@gmail.com\r\nlongfei.mao@uni.lu\r\nwww.lcsb.lu\r\n----------------------------\r\n"}}