{"action":"created","comment":{"url":"https://api.github.com/repos/idaholab/moose/pulls/comments/35925262","id":35925262,"diff_hunk":"@@ -0,0 +1,171 @@\n+#\n+# Test the split parsed function free enery Cahn-Hilliard Bulk kernel\n+# The free energy used here has the same functional form as the SplitCHPoly kernel\n+# If everything works, the output of this test should replicate the output\n+# of marmot/tests/chpoly_test/CHPoly_Cu_Split_test.i (exodiff match)\n+#\n+\n+[Mesh]\n+  type = GeneratedMesh\n+  dim = 2\n+  nx = 120\n+  ny = 120\n+  xmin = 0\n+  xmax = 500\n+  ymin = 0\n+  ymax = 500\n+  elem_type = QUAD4\n+[]\n+\n+#[Adaptivity]\n+#  max_h_level = 5\n+#  initial_steps = 2\n+#  initial_marker = marker\n+#  [./Indicators]\n+#    [./indicator]\n+#      type = GradientJumpIndicator\n+#      variable = c\n+#    [../]\n+#  [../]\n+#  [./Markers]\n+#    [./marker]\n+#      type = ErrorFractionMarker\n+#      indicator = indicator\n+#      refine = 0.9\n+#    [../]\n+#  [../]\n+#[]\n+\n+[Variables]\n+  [./c]\n+    order = FIRST\n+    family = LAGRANGE\n+    [./InitialCondition]\n+      type = RandomIC\n+      min = 0.2\n+      max = 0.21\n+    [../]\n+  [../]\n+  [./w]\n+    order = FIRST\n+    family = LAGRANGE\n+  [../]\n+[]\n+\n+[Kernels]\n+  [./c_res]\n+    type = SplitCHParsed\n+    variable = c\n+    f_name = F\n+    kappa_name = kappa_c\n+    w = w\n+  [../]\n+  [./w_res]\n+    type = SplitCHWRes\n+    variable = w\n+    mob_name = M\n+  [../]\n+  [./time]\n+    type = CoupledTimeDerivative\n+    variable = w\n+    v = c\n+  [../]\n+[]\n+\n+[Materials]\n+  [./pfmobility]\n+    type = PFMobility\n+    block = 0\n+    kappa = 25\n+    mob = 1\n+  [../]\n+\n+  [./chemical_free_energy]\n+    type = DerivativeParsedMaterial\n+    block = 0\n+    f_name = Fc\n+    args = 'c'\n+    constant_names       = 'barr_height  cv_eq'\n+    constant_expressions = '0.1          0'\n+    function = 16*barr_height*c^2*(1-c)^2 # +0.01*(c*plog(c,0.005)+(1-c)*plog(1-c,0.005))\n+    derivative_order = 2\n+    outputs = exodus\n+  [../]\n+  [./test]\n+    type = ParsedMaterial\n+    block = 0\n+    f_name = T\n+    args = c\n+    function = if(c>0.5,1.1,2.2)\n+    outputs = exodus\n+  [../]\n+  [./probability]\n+    type = ParsedMaterial\n+    block = 0\n+    f_name = P\n+    args = c\n+    function = c*1e-7\n+    outputs = exodus\n+  [../]\n+  [./nucleation]\n+    type = DiscreteNucleation\n+    block = 0\n+    f_name = Fn\n+    op_names  = c\n+    op_values = 0.95\n+    hold_time = 500\n+    penalty = 5\n+    probability = P # 0.5e-7\n+    outputs = exodus\n+  [../]\n+\n+  [./free_energy]\n+    type = DerivativeSumMaterial\n+    derivative_order = 2\n+    block = 0\n+    args = c\n+    sum_materials = 'Fc Fn'\n+  [../]\n+[]\n+\n+[Preconditioning]\n+  # active = ' '","path":"modules/phase_field/tests/Nucleation/cahn_hilliard.i","position":132,"original_position":132,"commit_id":"7202d079f1e1c7df7559096935b736222c8d6d61","original_commit_id":"c13d9e462587c40af6c38d10d9c748124be1d500","user":{"login":"tonkmr","id":6609220,"avatar_url":"https://avatars.githubusercontent.com/u/6609220?v=3","gravatar_id":"","url":"https://api.github.com/users/tonkmr","html_url":"https://github.com/tonkmr","followers_url":"https://api.github.com/users/tonkmr/followers","following_url":"https://api.github.com/users/tonkmr/following{/other_user}","gists_url":"https://api.github.com/users/tonkmr/gists{/gist_id}","starred_url":"https://api.github.com/users/tonkmr/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tonkmr/subscriptions","organizations_url":"https://api.github.com/users/tonkmr/orgs","repos_url":"https://api.github.com/users/tonkmr/repos","events_url":"https://api.github.com/users/tonkmr/events{/privacy}","received_events_url":"https://api.github.com/users/tonkmr/received_events","type":"User","site_admin":false},"body":"Get rid of this","created_at":"2015-07-30T21:49:31Z","updated_at":"2015-07-30T21:49:31Z","html_url":"https://github.com/idaholab/moose/pull/5483#discussion_r35925262","pull_request_url":"https://api.github.com/repos/idaholab/moose/pulls/5483","_links":{"self":{"href":"https://api.github.com/repos/idaholab/moose/pulls/comments/35925262"},"html":{"href":"https://github.com/idaholab/moose/pull/5483#discussion_r35925262"},"pull_request":{"href":"https://api.github.com/repos/idaholab/moose/pulls/5483"}}},"pull_request":{"url":"https://api.github.com/repos/idaholab/moose/pulls/5483","id":41274813,"html_url":"https://github.com/idaholab/moose/pull/5483","diff_url":"https://github.com/idaholab/moose/pull/5483.diff","patch_url":"https://github.com/idaholab/moose/pull/5483.patch","issue_url":"https://api.github.com/repos/idaholab/moose/issues/5483","number":5483,"state":"open","locked":false,"title":"Discrete nucleation for phase field","user":{"login":"dschwen","id":202302,"avatar_url":"https://avatars.githubusercontent.com/u/202302?v=3","gravatar_id":"","url":"https://api.github.com/users/dschwen","html_url":"https://github.com/dschwen","followers_url":"https://api.github.com/users/dschwen/followers","following_url":"https://api.github.com/users/dschwen/following{/other_user}","gists_url":"https://api.github.com/users/dschwen/gists{/gist_id}","starred_url":"https://api.github.com/users/dschwen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dschwen/subscriptions","organizations_url":"https://api.github.com/users/dschwen/orgs","repos_url":"https://api.github.com/users/dschwen/repos","events_url":"https://api.github.com/users/dschwen/events{/privacy}","received_events_url":"https://api.github.com/users/dschwen/received_events","type":"User","site_admin":false},"body":"This is the first generation of my nucleation system for phase field. I would like to get this merged even though I'm already working on the next iteration. This approach implements a nucleus insertion through modification of the local free energy.\r\n\r\nRefs. #5472 (please leave 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