{"action":"created","issue":{"url":"https://api.github.com/repos/briandconnelly/nicheconstruct/issues/80","labels_url":"https://api.github.com/repos/briandconnelly/nicheconstruct/issues/80/labels{/name}","comments_url":"https://api.github.com/repos/briandconnelly/nicheconstruct/issues/80/comments","events_url":"https://api.github.com/repos/briandconnelly/nicheconstruct/issues/80/events","html_url":"https://github.com/briandconnelly/nicheconstruct/issues/80","id":97989425,"number":80,"title":"Do sweep of initial cooperator proportion","user":{"login":"briandconnelly","id":658158,"avatar_url":"https://avatars.githubusercontent.com/u/658158?v=3","gravatar_id":"","url":"https://api.github.com/users/briandconnelly","html_url":"https://github.com/briandconnelly","followers_url":"https://api.github.com/users/briandconnelly/followers","following_url":"https://api.github.com/users/briandconnelly/following{/other_user}","gists_url":"https://api.github.com/users/briandconnelly/gists{/gist_id}","starred_url":"https://api.github.com/users/briandconnelly/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/briandconnelly/subscriptions","organizations_url":"https://api.github.com/users/briandconnelly/orgs","repos_url":"https://api.github.com/users/briandconnelly/repos","events_url":"https://api.github.com/users/briandconnelly/events{/privacy}","received_events_url":"https://api.github.com/users/briandconnelly/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/briandconnelly/nicheconstruct/labels/experiment","name":"experiment","color":"5319e7"}],"state":"open","locked":false,"assignee":{"login":"briandconnelly","id":658158,"avatar_url":"https://avatars.githubusercontent.com/u/658158?v=3","gravatar_id":"","url":"https://api.github.com/users/briandconnelly","html_url":"https://github.com/briandconnelly","followers_url":"https://api.github.com/users/briandconnelly/followers","following_url":"https://api.github.com/users/briandconnelly/following{/other_user}","gists_url":"https://api.github.com/users/briandconnelly/gists{/gist_id}","starred_url":"https://api.github.com/users/briandconnelly/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/briandconnelly/subscriptions","organizations_url":"https://api.github.com/users/briandconnelly/orgs","repos_url":"https://api.github.com/users/briandconnelly/repos","events_url":"https://api.github.com/users/briandconnelly/events{/privacy}","received_events_url":"https://api.github.com/users/briandconnelly/received_events","type":"User","site_admin":false},"milestone":null,"comments":1,"created_at":"2015-07-29T17:38:52Z","updated_at":"2015-08-05T21:22:03Z","closed_at":null,"body":"To address comments about evolution vs maintenance of cooperation, do a sweep of the initial cooperator proportion.\r\n\r\nInitial results from short (100 cycle) simulations shows a lot of variation, but cooperators are increasing in frequency when rare. I'm sure the initial thinning is very important here.\r\n\r\n![cooperator-change-100](https://cloud.githubusercontent.com/assets/658158/8965065/f9809442-35dd-11e5-820a-10e78330eec5.png)\r\n\r\n\r\n- [ ] Do simulations with 1%, 5%, and 10%.\r\n    - Maybe others if the affect isn't linear.\r\n- [ ] Do simulations with 0%. Run these for longer and with more reps. Is it possible for cooperation to arise and spread?\r\n- Combine data and create figure(s)\r\n    - [ ] Time series plot \r\n    - [ ] Integral in each of the treatments? \r\n- Add relevant things to repository\r\n    - [ ] Configuration file(s)\r\n    - [ ] Data set\r\n    - [ ] Analysis scripts\r\n    - [ ] Figures"},"comment":{"url":"https://api.github.com/repos/briandconnelly/nicheconstruct/issues/comments/128152750","html_url":"https://github.com/briandconnelly/nicheconstruct/issues/80#issuecomment-128152750","issue_url":"https://api.github.com/repos/briandconnelly/nicheconstruct/issues/80","id":128152750,"user":{"login":"briandconnelly","id":658158,"avatar_url":"https://avatars.githubusercontent.com/u/658158?v=3","gravatar_id":"","url":"https://api.github.com/users/briandconnelly","html_url":"https://github.com/briandconnelly","followers_url":"https://api.github.com/users/briandconnelly/followers","following_url":"https://api.github.com/users/briandconnelly/following{/other_user}","gists_url":"https://api.github.com/users/briandconnelly/gists{/gist_id}","starred_url":"https://api.github.com/users/briandconnelly/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/briandconnelly/subscriptions","organizations_url":"https://api.github.com/users/briandconnelly/orgs","repos_url":"https://api.github.com/users/briandconnelly/repos","events_url":"https://api.github.com/users/briandconnelly/events{/privacy}","received_events_url":"https://api.github.com/users/briandconnelly/received_events","type":"User","site_admin":false},"created_at":"2015-08-05T21:22:03Z","updated_at":"2015-08-05T21:22:03Z","body":"An update. Overall, the trend seems to show that cooperators increase in proportion.\r\n\r\n![initialcoop_change-all](https://cloud.githubusercontent.com/assets/658158/9098166/f254af7e-3b7c-11e5-8f0f-f75615ce2b3e.png)\r\n\r\nSo far, no instances of cooperators arising de novo (from p0=0) and spreading, but if there are enough replicates, it may happen..."}}