{"action":"closed","issue":{"url":"https://api.github.com/repos/gpertea/stringtie/issues/3","labels_url":"https://api.github.com/repos/gpertea/stringtie/issues/3/labels{/name}","comments_url":"https://api.github.com/repos/gpertea/stringtie/issues/3/comments","events_url":"https://api.github.com/repos/gpertea/stringtie/issues/3/events","html_url":"https://github.com/gpertea/stringtie/issues/3","id":62358834,"number":3,"title":"Segmentation fault with annotation file","user":{"login":"PeterVenhuizen","id":11519125,"avatar_url":"https://avatars.githubusercontent.com/u/11519125?v=3","gravatar_id":"","url":"https://api.github.com/users/PeterVenhuizen","html_url":"https://github.com/PeterVenhuizen","followers_url":"https://api.github.com/users/PeterVenhuizen/followers","following_url":"https://api.github.com/users/PeterVenhuizen/following{/other_user}","gists_url":"https://api.github.com/users/PeterVenhuizen/gists{/gist_id}","starred_url":"https://api.github.com/users/PeterVenhuizen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/PeterVenhuizen/subscriptions","organizations_url":"https://api.github.com/users/PeterVenhuizen/orgs","repos_url":"https://api.github.com/users/PeterVenhuizen/repos","events_url":"https://api.github.com/users/PeterVenhuizen/events{/privacy}","received_events_url":"https://api.github.com/users/PeterVenhuizen/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/gpertea/stringtie/labels/bug","name":"bug","color":"fc2929"}],"state":"closed","locked":false,"assignee":{"login":"gpertea","id":3372619,"avatar_url":"https://avatars.githubusercontent.com/u/3372619?v=3","gravatar_id":"","url":"https://api.github.com/users/gpertea","html_url":"https://github.com/gpertea","followers_url":"https://api.github.com/users/gpertea/followers","following_url":"https://api.github.com/users/gpertea/following{/other_user}","gists_url":"https://api.github.com/users/gpertea/gists{/gist_id}","starred_url":"https://api.github.com/users/gpertea/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gpertea/subscriptions","organizations_url":"https://api.github.com/users/gpertea/orgs","repos_url":"https://api.github.com/users/gpertea/repos","events_url":"https://api.github.com/users/gpertea/events{/privacy}","received_events_url":"https://api.github.com/users/gpertea/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/gpertea/stringtie/milestones/2","html_url":"https://github.com/gpertea/stringtie/milestones/1.0.4","labels_url":"https://api.github.com/repos/gpertea/stringtie/milestones/2/labels","id":1091284,"number":2,"title":"1.0.4","description":null,"creator":{"login":"gpertea","id":3372619,"avatar_url":"https://avatars.githubusercontent.com/u/3372619?v=3","gravatar_id":"","url":"https://api.github.com/users/gpertea","html_url":"https://github.com/gpertea","followers_url":"https://api.github.com/users/gpertea/followers","following_url":"https://api.github.com/users/gpertea/following{/other_user}","gists_url":"https://api.github.com/users/gpertea/gists{/gist_id}","starred_url":"https://api.github.com/users/gpertea/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gpertea/subscriptions","organizations_url":"https://api.github.com/users/gpertea/orgs","repos_url":"https://api.github.com/users/gpertea/repos","events_url":"https://api.github.com/users/gpertea/events{/privacy}","received_events_url":"https://api.github.com/users/gpertea/received_events","type":"User","site_admin":false},"open_issues":1,"closed_issues":3,"state":"open","created_at":"2015-04-30T15:32:02Z","updated_at":"2015-10-20T15:37:26Z","due_on":null,"closed_at":null},"comments":12,"created_at":"2015-03-17T10:45:42Z","updated_at":"2015-10-20T15:37:26Z","closed_at":"2015-10-20T15:37:26Z","body":"Hi, I'm trying to run stringtie (v1.0.2) with a annotation gff file, but every time I run it, it throws a segmentation fault (core dumped) and quits. Without the annotation gff file stringtie seems to run fine. Is this a bug, or might there be something wrong with my annotation file?\r\n\r\nI want to compare the stringtie output with cufflinks and because I run cufflinks with annotation, I want to run stringtie with an annotation file as well. \r\n\r\nThanks,\r\nPeter"}}