{"action":"created","issue":{"url":"https://api.github.com/repos/openworm/muscle_model/issues/29","labels_url":"https://api.github.com/repos/openworm/muscle_model/issues/29/labels{/name}","comments_url":"https://api.github.com/repos/openworm/muscle_model/issues/29/comments","events_url":"https://api.github.com/repos/openworm/muscle_model/issues/29/events","html_url":"https://github.com/openworm/muscle_model/issues/29","id":54711321,"number":29,"title":"Create setup.py to install dependencies to run NeuroML2 model","user":{"login":"slarson","id":1037756,"avatar_url":"https://avatars.githubusercontent.com/u/1037756?v=3","gravatar_id":"","url":"https://api.github.com/users/slarson","html_url":"https://github.com/slarson","followers_url":"https://api.github.com/users/slarson/followers","following_url":"https://api.github.com/users/slarson/following{/other_user}","gists_url":"https://api.github.com/users/slarson/gists{/gist_id}","starred_url":"https://api.github.com/users/slarson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/slarson/subscriptions","organizations_url":"https://api.github.com/users/slarson/orgs","repos_url":"https://api.github.com/users/slarson/repos","events_url":"https://api.github.com/users/slarson/events{/privacy}","received_events_url":"https://api.github.com/users/slarson/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/openworm/muscle_model/labels/enhancement","name":"enhancement","color":"84b6eb"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":3,"created_at":"2015-01-18T21:43:18Z","updated_at":"2015-01-25T15:56:41Z","closed_at":null,"body":"Translate the instructions to install the packages for the NeuroML2 model into a setup.py that can be run once.  This should be placed in the NeuroML2 directory\r\n\r\n```shell\r\nINSTALLDIR=~/git\r\nmkdir $INSTALLDIR\r\ncd $INSTALLDIR\r\ngit clone https://github.com/openworm/muscle_model\r\npip install git+https://github.com/OpenSourceBrain/osb-model-validation\r\npip install lxml\r\ngit clone https://github.com/NeuralEnsemble/libNeuroML.git\r\ncd libNeuroML\r\ngit checkout development\r\npython setup.py install\r\ncd ..\r\ngit clone https://github.com/LEMS/pylems.git\r\ncd pylems\r\ngit checkout development\r\npython setup.py install\r\ncd ..\r\ngit clone https://github.com/OpenSourceBrain/OSB_API.git\r\ncd OSB_API/python\r\npython setup.py install\r\npip install git+https://github.com/purcell/airspeed.git\r\ncd ../..\r\ngit clone https://github.com/openworm/BlueBrainProjectShowcase\r\n```"},"comment":{"url":"https://api.github.com/repos/openworm/muscle_model/issues/comments/71378436","html_url":"https://github.com/openworm/muscle_model/issues/29#issuecomment-71378436","issue_url":"https://api.github.com/repos/openworm/muscle_model/issues/29","id":71378436,"user":{"login":"net239","id":10525646,"avatar_url":"https://avatars.githubusercontent.com/u/10525646?v=3","gravatar_id":"","url":"https://api.github.com/users/net239","html_url":"https://github.com/net239","followers_url":"https://api.github.com/users/net239/followers","following_url":"https://api.github.com/users/net239/following{/other_user}","gists_url":"https://api.github.com/users/net239/gists{/gist_id}","starred_url":"https://api.github.com/users/net239/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/net239/subscriptions","organizations_url":"https://api.github.com/users/net239/orgs","repos_url":"https://api.github.com/users/net239/repos","events_url":"https://api.github.com/users/net239/events{/privacy}","received_events_url":"https://api.github.com/users/net239/received_events","type":"User","site_admin":false},"created_at":"2015-01-25T15:56:41Z","updated_at":"2015-01-25T15:56:41Z","body":"Thanks. I have managed to create setup.py which downloads dependencies from git.  \r\nRefer : https://github.com/net239/working/blob/master/setup.py\r\n\r\n\r\nA. It downloads everything mentioned in shell script pasted in this issues except : BlueBrainProjectShowcase\r\n\r\nB. I also see that to run the analyze_*.sh scripts you need jnml from https://github.com/NeuroML/jNeuroML\r\nthis is a JAVA project so I could not specify in depdenency_links\r\n\r\nC. take a look at https://github.com/net239/working/blob/master/setup.py and let me know if its good to commit \r\n\r\n\r\n"}}