{"action":"created","issue":{"url":"https://api.github.com/repos/ComputationalProteomicsUnit/Pbase/issues/23","labels_url":"https://api.github.com/repos/ComputationalProteomicsUnit/Pbase/issues/23/labels{/name}","comments_url":"https://api.github.com/repos/ComputationalProteomicsUnit/Pbase/issues/23/comments","events_url":"https://api.github.com/repos/ComputationalProteomicsUnit/Pbase/issues/23/events","html_url":"https://github.com/ComputationalProteomicsUnit/Pbase/issues/23","id":110420595,"number":23,"title":"Packages for BioC 3.2 (devel) build/check errors","user":{"login":"lgatto","id":384198,"avatar_url":"https://avatars.githubusercontent.com/u/384198?v=3","gravatar_id":"","url":"https://api.github.com/users/lgatto","html_url":"https://github.com/lgatto","followers_url":"https://api.github.com/users/lgatto/followers","following_url":"https://api.github.com/users/lgatto/following{/other_user}","gists_url":"https://api.github.com/users/lgatto/gists{/gist_id}","starred_url":"https://api.github.com/users/lgatto/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lgatto/subscriptions","organizations_url":"https://api.github.com/users/lgatto/orgs","repos_url":"https://api.github.com/users/lgatto/repos","events_url":"https://api.github.com/users/lgatto/events{/privacy}","received_events_url":"https://api.github.com/users/lgatto/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-10-08T10:38:20Z","updated_at":"2015-10-12T23:09:21Z","closed_at":"2015-10-12T23:09:21Z","body":"I can reproduce the error:\r\n\r\n```\r\n> ## Cleaving\r\n> pp <- cleave(p[1:100])\r\nError in checkAtAssignment(\"Proteins\", \"pranges\", \"list\") : \r\n  assignment of an object of class “list” is not valid for @‘pranges’ in an object of class “Proteins”; is(value, \"CompressedIRangesList\") is not TRUE\r\nCalls: cleave -> cleave -> .local -> checkAtAssignment\r\nExecution halted\r\n* checking for unstated dependencies in ‘tests’ ... OK\r\n* checking tests ...\r\n  Running ‘testthat.R’\r\n ERROR\r\nRunning the tests in ‘tests/testthat.R’ failed.\r\nLast 13 lines of output:\r\n         signalCondition(e)\r\n     }, \"assignment of an object of class \\\"list\\\" is not valid for @'pranges' in an object of class \\\"Proteins\\\"; is(value, \\\"CompressedIRangesList\\\") is not TRUE\", \r\n         quote(checkAtAssignment(structure(\"Proteins\", package = \"Pbase\"), \"pranges\", \r\n             \"list\")))\r\n  \r\n  testthat results ================================================================\r\n  OK: 48 SKIPPED: 0 FAILED: 3\r\n  1. Error: cleave \r\n  2. Error: isCleaved \r\n  3. Error: .calculateHeavyLabels \r\n  \r\n  Error: testthat unit tests failed\r\n  Execution halted\r\n```\r\n\r\n@sgibb It seems related to cleaving, which is more your expertise. Any hints?"},"comment":{"url":"https://api.github.com/repos/ComputationalProteomicsUnit/Pbase/issues/comments/147545576","html_url":"https://github.com/ComputationalProteomicsUnit/Pbase/issues/23#issuecomment-147545576","issue_url":"https://api.github.com/repos/ComputationalProteomicsUnit/Pbase/issues/23","id":147545576,"user":{"login":"lgatto","id":384198,"avatar_url":"https://avatars.githubusercontent.com/u/384198?v=3","gravatar_id":"","url":"https://api.github.com/users/lgatto","html_url":"https://github.com/lgatto","followers_url":"https://api.github.com/users/lgatto/followers","following_url":"https://api.github.com/users/lgatto/following{/other_user}","gists_url":"https://api.github.com/users/lgatto/gists{/gist_id}","starred_url":"https://api.github.com/users/lgatto/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lgatto/subscriptions","organizations_url":"https://api.github.com/users/lgatto/orgs","repos_url":"https://api.github.com/users/lgatto/repos","events_url":"https://api.github.com/users/lgatto/events{/privacy}","received_events_url":"https://api.github.com/users/lgatto/received_events","type":"User","site_admin":false},"created_at":"2015-10-12T23:09:21Z","updated_at":"2015-10-12T23:09:21Z","body":"Addressed in commit #525673c682ea097f60c1bc05fa44317576cc84a0"}}