{"action":"created","issue":{"url":"https://api.github.com/repos/CGATOxford/cgat/issues/129","labels_url":"https://api.github.com/repos/CGATOxford/cgat/issues/129/labels{/name}","comments_url":"https://api.github.com/repos/CGATOxford/cgat/issues/129/comments","events_url":"https://api.github.com/repos/CGATOxford/cgat/issues/129/events","html_url":"https://github.com/CGATOxford/cgat/issues/129","id":56845248,"number":129,"title":"Refactor pipelines using runExpression.py to filter and remove data2spike","user":{"login":"TomSmithCGAT","id":6096414,"avatar_url":"https://avatars.githubusercontent.com/u/6096414?v=3","gravatar_id":"","url":"https://api.github.com/users/TomSmithCGAT","html_url":"https://github.com/TomSmithCGAT","followers_url":"https://api.github.com/users/TomSmithCGAT/followers","following_url":"https://api.github.com/users/TomSmithCGAT/following{/other_user}","gists_url":"https://api.github.com/users/TomSmithCGAT/gists{/gist_id}","starred_url":"https://api.github.com/users/TomSmithCGAT/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/TomSmithCGAT/subscriptions","organizations_url":"https://api.github.com/users/TomSmithCGAT/orgs","repos_url":"https://api.github.com/users/TomSmithCGAT/repos","events_url":"https://api.github.com/users/TomSmithCGAT/events{/privacy}","received_events_url":"https://api.github.com/users/TomSmithCGAT/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/CGATOxford/cgat/labels/enhancement","name":"enhancement","color":"84b6eb"}],"state":"closed","locked":false,"assignee":{"login":"TomSmithCGAT","id":6096414,"avatar_url":"https://avatars.githubusercontent.com/u/6096414?v=3","gravatar_id":"","url":"https://api.github.com/users/TomSmithCGAT","html_url":"https://github.com/TomSmithCGAT","followers_url":"https://api.github.com/users/TomSmithCGAT/followers","following_url":"https://api.github.com/users/TomSmithCGAT/following{/other_user}","gists_url":"https://api.github.com/users/TomSmithCGAT/gists{/gist_id}","starred_url":"https://api.github.com/users/TomSmithCGAT/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/TomSmithCGAT/subscriptions","organizations_url":"https://api.github.com/users/TomSmithCGAT/orgs","repos_url":"https://api.github.com/users/TomSmithCGAT/repos","events_url":"https://api.github.com/users/TomSmithCGAT/events{/privacy}","received_events_url":"https://api.github.com/users/TomSmithCGAT/received_events","type":"User","site_admin":false},"milestone":null,"comments":1,"created_at":"2015-02-06T17:58:05Z","updated_at":"2015-04-27T07:47:44Z","closed_at":"2015-04-27T07:47:44Z","body":"Where pipelines use the filtering function of runExpression, this should be replace with counts2counts --method=filter \r\nAll the functionalities of data2spike.py are now contained in counts2counts --method=spike.\r\ndata2spike.py should be deleted and pipelines calling data2spike should be recoded."},"comment":{"url":"https://api.github.com/repos/CGATOxford/cgat/issues/comments/96543292","html_url":"https://github.com/CGATOxford/cgat/issues/129#issuecomment-96543292","issue_url":"https://api.github.com/repos/CGATOxford/cgat/issues/129","id":96543292,"user":{"login":"TomSmithCGAT","id":6096414,"avatar_url":"https://avatars.githubusercontent.com/u/6096414?v=3","gravatar_id":"","url":"https://api.github.com/users/TomSmithCGAT","html_url":"https://github.com/TomSmithCGAT","followers_url":"https://api.github.com/users/TomSmithCGAT/followers","following_url":"https://api.github.com/users/TomSmithCGAT/following{/other_user}","gists_url":"https://api.github.com/users/TomSmithCGAT/gists{/gist_id}","starred_url":"https://api.github.com/users/TomSmithCGAT/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/TomSmithCGAT/subscriptions","organizations_url":"https://api.github.com/users/TomSmithCGAT/orgs","repos_url":"https://api.github.com/users/TomSmithCGAT/repos","events_url":"https://api.github.com/users/TomSmithCGAT/events{/privacy}","received_events_url":"https://api.github.com/users/TomSmithCGAT/received_events","type":"User","site_admin":false},"created_at":"2015-04-27T07:47:44Z","updated_at":"2015-04-27T07:47:44Z","body":"Done"}}