{"action":"created","issue":{"url":"https://api.github.com/repos/monarch-initiative/dipper/issues/88","labels_url":"https://api.github.com/repos/monarch-initiative/dipper/issues/88/labels{/name}","comments_url":"https://api.github.com/repos/monarch-initiative/dipper/issues/88/comments","events_url":"https://api.github.com/repos/monarch-initiative/dipper/issues/88/events","html_url":"https://github.com/monarch-initiative/dipper/issues/88","id":65001297,"number":88,"title":"Add chr band maps for mouse and fish","user":{"login":"nlwashington","id":5124411,"avatar_url":"https://avatars.githubusercontent.com/u/5124411?v=3","gravatar_id":"","url":"https://api.github.com/users/nlwashington","html_url":"https://github.com/nlwashington","followers_url":"https://api.github.com/users/nlwashington/followers","following_url":"https://api.github.com/users/nlwashington/following{/other_user}","gists_url":"https://api.github.com/users/nlwashington/gists{/gist_id}","starred_url":"https://api.github.com/users/nlwashington/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nlwashington/subscriptions","organizations_url":"https://api.github.com/users/nlwashington/orgs","repos_url":"https://api.github.com/users/nlwashington/repos","events_url":"https://api.github.com/users/nlwashington/events{/privacy}","received_events_url":"https://api.github.com/users/nlwashington/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/monarch-initiative/dipper/labels/ucscbands","name":"ucscbands","color":"dd7aea"}],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/monarch-initiative/dipper/milestones/2","html_url":"https://github.com/monarch-initiative/dipper/milestones/Flip%20switch%20from%20Disco-%3EDipper","labels_url":"https://api.github.com/repos/monarch-initiative/dipper/milestones/2/labels","id":924463,"number":2,"title":"Flip switch from Disco->Dipper","description":"We will make a complete switchover from the Disco scheduler to Dipper for the sources that drive our current website (http://monarchinitiative.org/sources):\r\nBiogrid, ClinVar, Coriell, CTD, FlyBase, HPO, IMPC, KEGG, MGI, MPD, NCBI (Gene, Pub2Gene), OMIA, OMIM, Orphanet, Panther, Wormbase, ZFIN.\r\nThe switchover will also include running this off of Jenkins.","creator":{"login":"nlwashington","id":5124411,"avatar_url":"https://avatars.githubusercontent.com/u/5124411?v=3","gravatar_id":"","url":"https://api.github.com/users/nlwashington","html_url":"https://github.com/nlwashington","followers_url":"https://api.github.com/users/nlwashington/followers","following_url":"https://api.github.com/users/nlwashington/following{/other_user}","gists_url":"https://api.github.com/users/nlwashington/gists{/gist_id}","starred_url":"https://api.github.com/users/nlwashington/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nlwashington/subscriptions","organizations_url":"https://api.github.com/users/nlwashington/orgs","repos_url":"https://api.github.com/users/nlwashington/repos","events_url":"https://api.github.com/users/nlwashington/events{/privacy}","received_events_url":"https://api.github.com/users/nlwashington/received_events","type":"User","site_admin":false},"open_issues":28,"closed_issues":14,"state":"open","created_at":"2015-01-06T21:03:38Z","updated_at":"2015-04-23T23:23:00Z","due_on":"2015-05-01T07:00:00Z","closed_at":null},"comments":2,"created_at":"2015-03-28T23:22:56Z","updated_at":"2015-04-28T22:45:11Z","closed_at":null,"body":"We'll need to add the chr band maps for mouse and fish.\r\n\r\nThe cytogenic maps are here:\r\nhttp://hgdownload.cse.ucsc.edu/goldenPath/danRer7/database/cytoBandIdeo.txt.gz\r\nhttp://hgdownload.cse.ucsc.edu/goldenPath/mm10/database/cytoBandIdeo.txt.gz\r\n\r\nThis should get added to the existing UCSCBand data source."},"comment":{"url":"https://api.github.com/repos/monarch-initiative/dipper/issues/comments/97247493","html_url":"https://github.com/monarch-initiative/dipper/issues/88#issuecomment-97247493","issue_url":"https://api.github.com/repos/monarch-initiative/dipper/issues/88","id":97247493,"user":{"login":"nlwashington","id":5124411,"avatar_url":"https://avatars.githubusercontent.com/u/5124411?v=3","gravatar_id":"","url":"https://api.github.com/users/nlwashington","html_url":"https://github.com/nlwashington","followers_url":"https://api.github.com/users/nlwashington/followers","following_url":"https://api.github.com/users/nlwashington/following{/other_user}","gists_url":"https://api.github.com/users/nlwashington/gists{/gist_id}","starred_url":"https://api.github.com/users/nlwashington/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nlwashington/subscriptions","organizations_url":"https://api.github.com/users/nlwashington/orgs","repos_url":"https://api.github.com/users/nlwashington/repos","events_url":"https://api.github.com/users/nlwashington/events{/privacy}","received_events_url":"https://api.github.com/users/nlwashington/received_events","type":"User","site_admin":false},"created_at":"2015-04-28T22:45:11Z","updated_at":"2015-04-28T22:45:11Z","body":"but, the banding patterns just don't appear to be there.  (i can't find them anywhere for zebrafish).\r\n\r\nmouse have a slightly different regex.  here's the documentation:\r\nhttp://www.informatics.jax.org/mgihome/nomen/anomalies.shtml\r\ni had to modify the regex to parse the chromosome to include A-H after the long/short arms."}}