{"action":"created","issue":{"url":"https://api.github.com/repos/monarch-initiative/dipper/issues/37","labels_url":"https://api.github.com/repos/monarch-initiative/dipper/issues/37/labels{/name}","comments_url":"https://api.github.com/repos/monarch-initiative/dipper/issues/37/comments","events_url":"https://api.github.com/repos/monarch-initiative/dipper/issues/37/events","html_url":"https://github.com/monarch-initiative/dipper/issues/37","id":55200658,"number":37,"title":"add CTD drug-phenotype 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Release","description":"","creator":{"login":"mellybelly","id":796636,"avatar_url":"https://avatars.githubusercontent.com/u/796636?v=3","gravatar_id":"","url":"https://api.github.com/users/mellybelly","html_url":"https://github.com/mellybelly","followers_url":"https://api.github.com/users/mellybelly/followers","following_url":"https://api.github.com/users/mellybelly/following{/other_user}","gists_url":"https://api.github.com/users/mellybelly/gists{/gist_id}","starred_url":"https://api.github.com/users/mellybelly/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mellybelly/subscriptions","organizations_url":"https://api.github.com/users/mellybelly/orgs","repos_url":"https://api.github.com/users/mellybelly/repos","events_url":"https://api.github.com/users/mellybelly/events{/privacy}","received_events_url":"https://api.github.com/users/mellybelly/received_events","type":"User","site_admin":false},"open_issues":1,"closed_issues":5,"state":"open","created_at":"2015-01-22T19:40:22Z","updated_at":"2015-04-23T22:14:13Z","due_on":"2015-03-01T08:00:00Z","closed_at":null},"comments":17,"created_at":"2015-01-22T19:56:09Z","updated_at":"2015-05-28T07:20:49Z","closed_at":null,"body":"Add a new module to bring in CTD (http://ctdbase.org/downloads/):\r\nhttp://ctdbase.org/reports/CTD_chemicals_diseases.tsv.gz\r\nthe annotations in this file include both diseases and phenotypes (as they are mixed in MeSH).\r\n\r\nat first, let's bring in only the asserted associations (rather than inferred).  \r\n\r\nthis may require a new Drug2Phenotype association class.  \r\n\r\nthis may also require bringing in the chemicals vocab:\r\nhttp://ctdbase.org/reports/CTD_chemicals.tsv.gz\r\nand the diseases vocab:\r\nhttp://ctdbase.org/reports/CTD_diseases.tsv.gz\r\n"},"comment":{"url":"https://api.github.com/repos/monarch-initiative/dipper/issues/comments/106207109","html_url":"https://github.com/monarch-initiative/dipper/issues/37#issuecomment-106207109","issue_url":"https://api.github.com/repos/monarch-initiative/dipper/issues/37","id":106207109,"user":{"login":"nlwashington","id":5124411,"avatar_url":"https://avatars.githubusercontent.com/u/5124411?v=3","gravatar_id":"","url":"https://api.github.com/users/nlwashington","html_url":"https://github.com/nlwashington","followers_url":"https://api.github.com/users/nlwashington/followers","following_url":"https://api.github.com/users/nlwashington/following{/other_user}","gists_url":"https://api.github.com/users/nlwashington/gists{/gist_id}","starred_url":"https://api.github.com/users/nlwashington/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nlwashington/subscriptions","organizations_url":"https://api.github.com/users/nlwashington/orgs","repos_url":"https://api.github.com/users/nlwashington/repos","events_url":"https://api.github.com/users/nlwashington/events{/privacy}","received_events_url":"https://api.github.com/users/nlwashington/received_events","type":"User","site_admin":false},"created_at":"2015-05-28T07:20:49Z","updated_at":"2015-05-28T07:20:49Z","body":"@kshefchek there seems to be an accessory file that includes publications that you've manually acquired and is part of the pipeline.  can you document how you got this file in the dipper module?  how can we keep it updated?\r\n\r\nalso, did you contact them about if they have any way of disambiguating \"marker\" from \"mechanism\"?  those seem to be conflated, and really mean very different things.  without disambiguation, i think we can at best only say that things related by \"marker/mechanism\" are just correlated in some way."}}