{"action":"created","comment":{"url":"https://api.github.com/repos/ga4gh/server/pulls/comments/38753830","id":38753830,"diff_hunk":"@@ -187,6 +187,13 @@ def toProtocolElement(self):\n         stats.baseCount = None  # TODO requires iterating through all reads\n         readGroup.stats = stats\n         readGroup.programs = self.getPrograms()\n+        experiment = protocol.Experiment()\n+        experiment.id = 'TODO'","path":"ga4gh/datamodel/reads.py","position":5,"original_position":5,"commit_id":"c63a1f7c739d1dfcde9789d0584caa4c9193343e","original_commit_id":"c63a1f7c739d1dfcde9789d0584caa4c9193343e","user":{"login":"dcolligan","id":7422120,"avatar_url":"https://avatars.githubusercontent.com/u/7422120?v=3","gravatar_id":"","url":"https://api.github.com/users/dcolligan","html_url":"https://github.com/dcolligan","followers_url":"https://api.github.com/users/dcolligan/followers","following_url":"https://api.github.com/users/dcolligan/following{/other_user}","gists_url":"https://api.github.com/users/dcolligan/gists{/gist_id}","starred_url":"https://api.github.com/users/dcolligan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dcolligan/subscriptions","organizations_url":"https://api.github.com/users/dcolligan/orgs","repos_url":"https://api.github.com/users/dcolligan/repos","events_url":"https://api.github.com/users/dcolligan/events{/privacy}","received_events_url":"https://api.github.com/users/dcolligan/received_events","type":"User","site_admin":false},"body":"where are these values supposed to come from?  the sam header does not have most of them... metadata, presumably?","created_at":"2015-09-04T13:59:21Z","updated_at":"2015-09-04T13:59:21Z","html_url":"https://github.com/ga4gh/server/pull/608#discussion_r38753830","pull_request_url":"https://api.github.com/repos/ga4gh/server/pulls/608","_links":{"self":{"href":"https://api.github.com/repos/ga4gh/server/pulls/comments/38753830"},"html":{"href":"https://github.com/ga4gh/server/pull/608#discussion_r38753830"},"pull_request":{"href":"https://api.github.com/repos/ga4gh/server/pulls/608"}}},"pull_request":{"url":"https://api.github.com/repos/ga4gh/server/pulls/608","id":44220528,"html_url":"https://github.com/ga4gh/server/pull/608","diff_url":"https://github.com/ga4gh/server/pull/608.diff","patch_url":"https://github.com/ga4gh/server/pull/608.patch","issue_url":"https://api.github.com/repos/ga4gh/server/issues/608","number":608,"state":"open","locked":false,"title":"Fill out read group experiment field","user":{"login":"dcolligan","id":7422120,"avatar_url":"https://avatars.githubusercontent.com/u/7422120?v=3","gravatar_id":"","url":"https://api.github.com/users/dcolligan","html_url":"https://github.com/dcolligan","followers_url":"https://api.github.com/users/dcolligan/followers","following_url":"https://api.github.com/users/dcolligan/following{/other_user}","gists_url":"https://api.github.com/users/dcolligan/gists{/gist_id}","starred_url":"https://api.github.com/users/dcolligan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dcolligan/subscriptions","organizations_url":"https://api.github.com/users/dcolligan/orgs","repos_url":"https://api.github.com/users/dcolligan/repos","events_url":"https://api.github.com/users/dcolligan/events{/privacy}","received_events_url":"https://api.github.com/users/dcolligan/received_events","type":"User","site_admin":false},"body":"Issue #606","created_at":"2015-09-04T13:58:56Z","updated_at":"2015-09-04T13:59:22Z","closed_at":null,"merged_at":null,"merge_commit_sha":"42965bec94d1b436fc1d78689e8647afa419aad0","assignee":null,"milestone":null,"commits_url":"https://api.github.com/repos/ga4gh/server/pulls/608/commits","review_comments_url":"https://api.github.com/repos/ga4gh/server/pulls/608/comments","review_comment_url":"https://api.github.com/repos/ga4gh/server/pulls/comments{/number}","comments_url":"https://api.github.com/repos/ga4gh/server/issues/608/comments","statuses_url":"https://api.github.com/repos/ga4gh/server/statuses/c63a1f7c739d1dfcde9789d0584caa4c9193343e","head":{"label":"dcolligan:606_experiment","ref":"606_experiment","sha":"c63a1f7c739d1dfcde9789d0584caa4c9193343e","user":{"login":"dcolligan","id":7422120,"avatar_url":"https://avatars.githubusercontent.com/u/7422120?v=3","gravatar_id":"","url":"https://api.github.com/users/dcolligan","html_url":"https://github.com/dcolligan","followers_url":"https://api.github.com/users/dcolligan/followers","following_url":"https://api.github.com/users/dcolligan/following{/other_user}","gists_url":"https://api.github.com/users/dcolligan/gists{/gist_id}","starred_url":"https://api.github.com/users/dcolligan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dcolligan/subscriptions","organizations_url":"https://api.github.com/users/dcolligan/orgs","repos_url":"https://api.github.com/users/dcolligan/repos","events_url":"https://api.github.com/users/dcolligan/events{/privacy}","received_events_url":"https://api.github.com/users/dcolligan/received_events","type":"User","site_admin":false},"repo":{"id":29265238,"name":"server","full_name":"dcolligan/server","owner":{"login":"dcolligan","id":7422120,"avatar_url":"https://avatars.githubusercontent.com/u/7422120?v=3","gravatar_id":"","url":"https://api.github.com/users/dcolligan","html_url":"https://github.com/dcolligan","followers_url":"https://api.github.com/users/dcolligan/followers","following_url":"https://api.github.com/users/dcolligan/following{/other_user}","gists_url":"https://api.github.com/users/dcolligan/gists{/gist_id}","starred_url":"https://api.github.com/users/dcolligan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dcolligan/subscriptions","organizations_url":"https://api.github.com/users/dcolligan/orgs","repos_url":"https://api.github.com/users/dcolligan/repos","events_url":"https://api.github.com/users/dcolligan/events{/privacy}","received_events_url":"https://api.github.com/users/dcolligan/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/dcolligan/server","description":"A reference implementation of the APIs defined in the schemas repository.","fork":true,"url":"https://api.github.com/repos/dcolligan/server","forks_url":"https://api.github.com/repos/dcolligan/server/forks","keys_url":"https://api.github.com/repos/dcolligan/server/keys{/key_id}","collaborators_url":"https://api.github.com/repos/dcolligan/server/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/dcolligan/server/teams","hooks_url":"https://api.github.com/repos/dcolligan/server/hooks","issue_events_url":"https://api.github.com/repos/dcolligan/server/issues/events{/number}","events_url":"https://api.github.com/repos/dcolligan/server/events","assignees_url":"https://api.github.com/repos/dcolligan/server/assignees{/user}","branches_url":"https://api.github.com/repos/dcolligan/server/branches{/branch}","tags_url":"https://api.github.com/repos/dcolligan/server/tags","blobs_url":"https://api.github.com/repos/dcolligan/server/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/dcolligan/server/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/dcolligan/server/git/refs{/sha}","trees_url":"https://api.github.com/repos/dcolligan/server/git/trees{/sha}","statuses_url":"https://api.github.com/repos/dcolligan/server/statuses/{sha}","languages_url":"https://api.github.com/repos/dcolligan/server/languages","stargazers_url":"https://api.github.com/repos/dcolligan/server/stargazers","contributors_url":"https://api.github.com/repos/dcolligan/server/contributors","subscribers_url":"https://api.github.com/repos/dcolligan/server/subscribers","subscription_url":"https://api.github.com/repos/dcolligan/server/subscription","commits_url":"https://api.github.com/repos/dcolligan/server/commits{/sha}","git_commits_url":"https://api.github.com/repos/dcolligan/server/git/commits{/sha}","comments_url":"https://api.github.com/repos/dcolligan/server/comments{/number}","issue_comment_url":"https://api.github.com/repos/dcolligan/server/issues/comments{/number}","contents_url":"https://api.github.com/repos/dcolligan/server/contents/{+path}","compare_url":"https://api.github.com/repos/dcolligan/server/compare/{base}...{head}","merges_url":"https://api.github.com/repos/dcolligan/server/merges","archive_url":"https://api.github.com/repos/dcolligan/server/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/dcolligan/server/downloads","issues_url":"https://api.github.com/repos/dcolligan/server/issues{/number}","pulls_url":"https://api.github.com/repos/dcolligan/server/pulls{/number}","milestones_url":"https://api.github.com/repos/dcolligan/server/milestones{/number}","notifications_url":"https://api.github.com/repos/dcolligan/server/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/dcolligan/server/labels{/name}","releases_url":"https://api.github.com/repos/dcolligan/server/releases{/id}","created_at":"2015-01-14T20:53:47Z","updated_at":"2015-04-06T15:59:26Z","pushed_at":"2015-09-04T13:56:13Z","git_url":"git://github.com/dcolligan/server.git","ssh_url":"git@github.com:dcolligan/server.git","clone_url":"https://github.com/dcolligan/server.git","svn_url":"https://github.com/dcolligan/server","homepage":null,"size":4049,"stargazers_count":0,"watchers_count":0,"language":"Python","has_issues":false,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":0,"mirror_url":null,"open_issues_count":0,"forks":0,"open_issues":0,"watchers":0,"default_branch":"master"}},"base":{"label":"ga4gh:develop","ref":"develop","sha":"32b5d86f3dc03a23b9b927fdcb25b56a0303b9d3","user":{"login":"ga4gh","id":6921777,"avatar_url":"https://avatars.githubusercontent.com/u/6921777?v=3","gravatar_id":"","url":"https://api.github.com/users/ga4gh","html_url":"https://github.com/ga4gh","followers_url":"https://api.github.com/users/ga4gh/followers","following_url":"https://api.github.com/users/ga4gh/following{/other_user}","gists_url":"https://api.github.com/users/ga4gh/gists{/gist_id}","starred_url":"https://api.github.com/users/ga4gh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ga4gh/subscriptions","organizations_url":"https://api.github.com/users/ga4gh/orgs","repos_url":"https://api.github.com/users/ga4gh/repos","events_url":"https://api.github.com/users/ga4gh/events{/privacy}","received_events_url":"https://api.github.com/users/ga4gh/received_events","type":"Organization","site_admin":false},"repo":{"id":22882621,"name":"server","full_name":"ga4gh/server","owner":{"login":"ga4gh","id":6921777,"avatar_url":"https://avatars.githubusercontent.com/u/6921777?v=3","gravatar_id":"","url":"https://api.github.com/users/ga4gh","html_url":"https://github.com/ga4gh","followers_url":"https://api.github.com/users/ga4gh/followers","following_url":"https://api.github.com/users/ga4gh/following{/other_user}","gists_url":"https://api.github.com/users/ga4gh/gists{/gist_id}","starred_url":"https://api.github.com/users/ga4gh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ga4gh/subscriptions","organizations_url":"https://api.github.com/users/ga4gh/orgs","repos_url":"https://api.github.com/users/ga4gh/repos","events_url":"https://api.github.com/users/ga4gh/events{/privacy}","received_events_url":"https://api.github.com/users/ga4gh/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/ga4gh/server","description":"A reference implementation of the APIs defined in the schemas repository.","fork":false,"url":"https://api.github.com/repos/ga4gh/server","forks_url":"https://api.github.com/repos/ga4gh/server/forks","keys_url":"https://api.github.com/repos/ga4gh/server/keys{/key_id}","collaborators_url":"https://api.github.com/repos/ga4gh/server/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/ga4gh/server/teams","hooks_url":"https://api.github.com/repos/ga4gh/server/hooks","issue_events_url":"https://api.github.com/repos/ga4gh/server/issues/events{/number}","events_url":"https://api.github.com/repos/ga4gh/server/events","assignees_url":"https://api.github.com/repos/ga4gh/server/assignees{/user}","branches_url":"https://api.github.com/repos/ga4gh/server/branches{/branch}","tags_url":"https://api.github.com/repos/ga4gh/server/tags","blobs_url":"https://api.github.com/repos/ga4gh/server/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/ga4gh/server/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/ga4gh/server/git/refs{/sha}","trees_url":"https://api.github.com/repos/ga4gh/server/git/trees{/sha}","statuses_url":"https://api.github.com/repos/ga4gh/server/statuses/{sha}","languages_url":"https://api.github.com/repos/ga4gh/server/languages","stargazers_url":"https://api.github.com/repos/ga4gh/server/stargazers","contributors_url":"https://api.github.com/repos/ga4gh/server/contributors","subscribers_url":"https://api.github.com/repos/ga4gh/server/subscribers","subscription_url":"https://api.github.com/repos/ga4gh/server/subscription","commits_url":"https://api.github.com/repos/ga4gh/server/commits{/sha}","git_commits_url":"https://api.github.com/repos/ga4gh/server/git/commits{/sha}","comments_url":"https://api.github.com/repos/ga4gh/server/comments{/number}","issue_comment_url":"https://api.github.com/repos/ga4gh/server/issues/comments{/number}","contents_url":"https://api.github.com/repos/ga4gh/server/contents/{+path}","compare_url":"https://api.github.com/repos/ga4gh/server/compare/{base}...{head}","merges_url":"https://api.github.com/repos/ga4gh/server/merges","archive_url":"https://api.github.com/repos/ga4gh/server/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/ga4gh/server/downloads","issues_url":"https://api.github.com/repos/ga4gh/server/issues{/number}","pulls_url":"https://api.github.com/repos/ga4gh/server/pulls{/number}","milestones_url":"https://api.github.com/repos/ga4gh/server/milestones{/number}","notifications_url":"https://api.github.com/repos/ga4gh/server/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/ga4gh/server/labels{/name}","releases_url":"https://api.github.com/repos/ga4gh/server/releases{/id}","created_at":"2014-08-12T15:31:49Z","updated_at":"2015-07-24T08:16:15Z","pushed_at":"2015-09-04T13:58:57Z","git_url":"git://github.com/ga4gh/server.git","ssh_url":"git@github.com:ga4gh/server.git","clone_url":"https://github.com/ga4gh/server.git","svn_url":"https://github.com/ga4gh/server","homepage":null,"size":6798,"stargazers_count":40,"watchers_count":40,"language":"Python","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":43,"mirror_url":null,"open_issues_count":64,"forks":43,"open_issues":64,"watchers":40,"default_branch":"develop"}},"_links":{"self":{"href":"https://api.github.com/repos/ga4gh/server/pulls/608"},"html":{"href":"https://github.com/ga4gh/server/pull/608"},"issue":{"href":"https://api.github.com/repos/ga4gh/server/issues/608"},"comments":{"href":"https://api.github.com/repos/ga4gh/server/issues/608/comments"},"review_comments":{"href":"https://api.github.com/repos/ga4gh/server/pulls/608/comments"},"review_comment":{"href":"https://api.github.com/repos/ga4gh/server/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/ga4gh/server/pulls/608/commits"},"statuses":{"href":"https://api.github.com/repos/ga4gh/server/statuses/c63a1f7c739d1dfcde9789d0584caa4c9193343e"}}}}