{"action":"created","issue":{"url":"https://api.github.com/repos/opencb/opencga/issues/97","labels_url":"https://api.github.com/repos/opencb/opencga/issues/97/labels{/name}","comments_url":"https://api.github.com/repos/opencb/opencga/issues/97/comments","events_url":"https://api.github.com/repos/opencb/opencga/issues/97/events","html_url":"https://github.com/opencb/opencga/issues/97","id":72463561,"number":97,"title":"Remove -D options that are not related to internal aspects","user":{"login":"cyenyxe","id":1433407,"avatar_url":"https://avatars.githubusercontent.com/u/1433407?v=3","gravatar_id":"","url":"https://api.github.com/users/cyenyxe","html_url":"https://github.com/cyenyxe","followers_url":"https://api.github.com/users/cyenyxe/followers","following_url":"https://api.github.com/users/cyenyxe/following{/other_user}","gists_url":"https://api.github.com/users/cyenyxe/gists{/gist_id}","starred_url":"https://api.github.com/users/cyenyxe/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cyenyxe/subscriptions","organizations_url":"https://api.github.com/users/cyenyxe/orgs","repos_url":"https://api.github.com/users/cyenyxe/repos","events_url":"https://api.github.com/users/cyenyxe/events{/privacy}","received_events_url":"https://api.github.com/users/cyenyxe/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/opencb/opencga/labels/enhancement","name":"enhancement","color":"bfe5bf"}],"state":"open","locked":false,"assignee":{"login":"j-coll","id":4750611,"avatar_url":"https://avatars.githubusercontent.com/u/4750611?v=3","gravatar_id":"","url":"https://api.github.com/users/j-coll","html_url":"https://github.com/j-coll","followers_url":"https://api.github.com/users/j-coll/followers","following_url":"https://api.github.com/users/j-coll/following{/other_user}","gists_url":"https://api.github.com/users/j-coll/gists{/gist_id}","starred_url":"https://api.github.com/users/j-coll/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/j-coll/subscriptions","organizations_url":"https://api.github.com/users/j-coll/orgs","repos_url":"https://api.github.com/users/j-coll/repos","events_url":"https://api.github.com/users/j-coll/events{/privacy}","received_events_url":"https://api.github.com/users/j-coll/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/opencb/opencga/milestones/3","html_url":"https://github.com/opencb/opencga/milestones/v0.6.0","labels_url":"https://api.github.com/repos/opencb/opencga/milestones/3/labels","id":884769,"number":3,"title":"v0.6.0","description":"This release it is an important milestone in OpenCGA in our roadmap to v1.0, the main goal of this release is to provide a stable schema for both Catalog and Variant & Alignment storage engine schemas and DB Adaptors for MongoDB plugin. This will make data loaded in version 0.6 to be queryable in next releases with no new data load.\r\n\r\nOther goals include:\r\n * new configuration system for storage engines\r\n * REST API methods and paramteres stabilization\r\n * command line improvements to improve usability\r\n * many bug fixes and small improvements","creator":{"login":"imedina","id":1427327,"avatar_url":"https://avatars.githubusercontent.com/u/1427327?v=3","gravatar_id":"","url":"https://api.github.com/users/imedina","html_url":"https://github.com/imedina","followers_url":"https://api.github.com/users/imedina/followers","following_url":"https://api.github.com/users/imedina/following{/other_user}","gists_url":"https://api.github.com/users/imedina/gists{/gist_id}","starred_url":"https://api.github.com/users/imedina/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/imedina/subscriptions","organizations_url":"https://api.github.com/users/imedina/orgs","repos_url":"https://api.github.com/users/imedina/repos","events_url":"https://api.github.com/users/imedina/events{/privacy}","received_events_url":"https://api.github.com/users/imedina/received_events","type":"User","site_admin":false},"open_issues":4,"closed_issues":54,"state":"open","created_at":"2014-11-30T12:18:39Z","updated_at":"2015-08-18T10:25:04Z","due_on":"2015-08-27T23:00:00Z","closed_at":null},"comments":0,"created_at":"2015-05-01T16:06:58Z","updated_at":"2015-08-18T10:26:05Z","closed_at":null,"body":"Options prefixed by -D are intended to be used for configuration or advanced internal purposed, but currently they are used for more common tasks too (such as specifying output file extensions or workflow steps to omit).\r\n\r\nThese common options must be moved to the set of standard options, documented in the default CLI help.\r\n\r\n* Depends on https://github.com/opencb/opencga/issues/96"},"comment":{"url":"https://api.github.com/repos/opencb/opencga/issues/comments/132158608","html_url":"https://github.com/opencb/opencga/issues/97#issuecomment-132158608","issue_url":"https://api.github.com/repos/opencb/opencga/issues/97","id":132158608,"user":{"login":"imedina","id":1427327,"avatar_url":"https://avatars.githubusercontent.com/u/1427327?v=3","gravatar_id":"","url":"https://api.github.com/users/imedina","html_url":"https://github.com/imedina","followers_url":"https://api.github.com/users/imedina/followers","following_url":"https://api.github.com/users/imedina/following{/other_user}","gists_url":"https://api.github.com/users/imedina/gists{/gist_id}","starred_url":"https://api.github.com/users/imedina/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/imedina/subscriptions","organizations_url":"https://api.github.com/users/imedina/orgs","repos_url":"https://api.github.com/users/imedina/repos","events_url":"https://api.github.com/users/imedina/events{/privacy}","received_events_url":"https://api.github.com/users/imedina/received_events","type":"User","site_admin":false},"created_at":"2015-08-18T10:26:05Z","updated_at":"2015-08-18T10:26:05Z","body":"Some of this has been removed but other may still need to be removed, moving it to RC"}}