{"action":"created","issue":{"url":"https://api.github.com/repos/stephenturner/qqman/issues/27","labels_url":"https://api.github.com/repos/stephenturner/qqman/issues/27/labels{/name}","comments_url":"https://api.github.com/repos/stephenturner/qqman/issues/27/comments","events_url":"https://api.github.com/repos/stephenturner/qqman/issues/27/events","html_url":"https://github.com/stephenturner/qqman/pull/27","id":83113466,"number":27,"title":"fix bug for axis location with missing chromosomes.","user":{"login":"Liubuntu","id":12683977,"avatar_url":"https://avatars.githubusercontent.com/u/12683977?v=3","gravatar_id":"","url":"https://api.github.com/users/Liubuntu","html_url":"https://github.com/Liubuntu","followers_url":"https://api.github.com/users/Liubuntu/followers","following_url":"https://api.github.com/users/Liubuntu/following{/other_user}","gists_url":"https://api.github.com/users/Liubuntu/gists{/gist_id}","starred_url":"https://api.github.com/users/Liubuntu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Liubuntu/subscriptions","organizations_url":"https://api.github.com/users/Liubuntu/orgs","repos_url":"https://api.github.com/users/Liubuntu/repos","events_url":"https://api.github.com/users/Liubuntu/events{/privacy}","received_events_url":"https://api.github.com/users/Liubuntu/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-05-31T15:33:08Z","updated_at":"2015-06-01T13:00:59Z","closed_at":"2015-06-01T13:00:55Z","pull_request":{"url":"https://api.github.com/repos/stephenturner/qqman/pulls/27","html_url":"https://github.com/stephenturner/qqman/pull/27","diff_url":"https://github.com/stephenturner/qqman/pull/27.diff","patch_url":"https://github.com/stephenturner/qqman/pull/27.patch"},"body":"Hi Stephen,\r\n\r\nThank you for developing this useful tool. I have been using this package with my GWAS results all the time. But recently I have a dataset with only limited number of chromosomes, (e.g., only variants on chromosome 1,3,8) and when I try to draw the manhattan plot, there is problem in showing the xlabels with wrong location.\r\n\r\nI also found there is a similar issue reported by \"bdvelie\". I used his dataset and redraw the manhattan plot with my fix. Here is the result. \r\n\r\nQian\r\n\r\n```r\r\nsd <- read.table(\"https://gist.githubusercontent.com/bdvelie/71d9245df7e9a21916f7/raw/Sample\",header=TRUE)\r\nmanhattan(sd)\r\n```\r\n![new](https://cloud.githubusercontent.com/assets/12683977/7902431/83b0d904-0787-11e5-8843-949cae629300.png)\r\n"},"comment":{"url":"https://api.github.com/repos/stephenturner/qqman/issues/comments/107433852","html_url":"https://github.com/stephenturner/qqman/pull/27#issuecomment-107433852","issue_url":"https://api.github.com/repos/stephenturner/qqman/issues/27","id":107433852,"user":{"login":"stephenturner","id":460076,"avatar_url":"https://avatars.githubusercontent.com/u/460076?v=3","gravatar_id":"","url":"https://api.github.com/users/stephenturner","html_url":"https://github.com/stephenturner","followers_url":"https://api.github.com/users/stephenturner/followers","following_url":"https://api.github.com/users/stephenturner/following{/other_user}","gists_url":"https://api.github.com/users/stephenturner/gists{/gist_id}","starred_url":"https://api.github.com/users/stephenturner/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/stephenturner/subscriptions","organizations_url":"https://api.github.com/users/stephenturner/orgs","repos_url":"https://api.github.com/users/stephenturner/repos","events_url":"https://api.github.com/users/stephenturner/events{/privacy}","received_events_url":"https://api.github.com/users/stephenturner/received_events","type":"User","site_admin":false},"created_at":"2015-06-01T13:00:59Z","updated_at":"2015-06-01T13:00:59Z","body":"thanks!"}}