{"action":"created","issue":{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/104","labels_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/104/labels{/name}","comments_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/104/comments","events_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/104/events","html_url":"https://github.com/galaxyproject/tools-iuc/issues/104","id":67683526,"number":104,"title":"Numpy 1.7 dies due to missing libf77blas.so.3","user":{"login":"lparsons","id":645128,"avatar_url":"https://avatars.githubusercontent.com/u/645128?v=3","gravatar_id":"","url":"https://api.github.com/users/lparsons","html_url":"https://github.com/lparsons","followers_url":"https://api.github.com/users/lparsons/followers","following_url":"https://api.github.com/users/lparsons/following{/other_user}","gists_url":"https://api.github.com/users/lparsons/gists{/gist_id}","starred_url":"https://api.github.com/users/lparsons/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lparsons/subscriptions","organizations_url":"https://api.github.com/users/lparsons/orgs","repos_url":"https://api.github.com/users/lparsons/repos","events_url":"https://api.github.com/users/lparsons/events{/privacy}","received_events_url":"https://api.github.com/users/lparsons/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2015-04-10T21:06:04Z","updated_at":"2015-04-15T18:29:08Z","closed_at":null,"body":"When attempting to use MACS2 (which depends on numpy 1.7) I get the following error:\r\n\r\n    ImportError: libf77blas.so.3: cannot open shared object file: No such file or directory\r\n\r\nAtlas seems to be installed just fine, but it doesn't seem like that env.sh is sourced except during numpy installation. Not sure if that's the issue, but seems like it might be."},"comment":{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/comments/93522767","html_url":"https://github.com/galaxyproject/tools-iuc/issues/104#issuecomment-93522767","issue_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/104","id":93522767,"user":{"login":"lparsons","id":645128,"avatar_url":"https://avatars.githubusercontent.com/u/645128?v=3","gravatar_id":"","url":"https://api.github.com/users/lparsons","html_url":"https://github.com/lparsons","followers_url":"https://api.github.com/users/lparsons/followers","following_url":"https://api.github.com/users/lparsons/following{/other_user}","gists_url":"https://api.github.com/users/lparsons/gists{/gist_id}","starred_url":"https://api.github.com/users/lparsons/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lparsons/subscriptions","organizations_url":"https://api.github.com/users/lparsons/orgs","repos_url":"https://api.github.com/users/lparsons/repos","events_url":"https://api.github.com/users/lparsons/events{/privacy}","received_events_url":"https://api.github.com/users/lparsons/received_events","type":"User","site_admin":false},"created_at":"2015-04-15T18:29:08Z","updated_at":"2015-04-15T18:29:08Z","body":"I've definitely had issues with package_* dependencies changing revisions.\nCould be there was an earlier one installed?  I often end up with two\nrecords in Galaxy for different revisions of the sample package_*\ndependency.  I'm never really sure how to resolve it, any tips on how to\n\"clean up\" the list of installed revisions would be most welcome.\n\nLance\n\nOn Wed, Apr 15, 2015 at 2:12 PM, Eric Rasche <notifications@github.com>\nwrote:\n\n> Huh, that's odd. According to the diff\n>\n> https://toolshed.g2.bx.psu.edu/repository/view_changeset?ctx_str=859c982b1f7f&id=e984c9f63184b207\n> it should install package_numpy_1_7 at 692ae723f63e which is two commits\n> behind yours. Wonder why it's ignoring specific changeset revision\n> information.\n>\n> Anyway, back to your issue...that LOOKS like it's suppose to work. I'll see\n> if I can reproduce it later and debug. Thanks for the information lance!\n>\n> ons. 15. apr. 2015 kl. 13.00 skrev Lance Parsons <notifications@github.com\n> >:\n>\n> > Using the latest MACS2 (859c982b1f7f) and letting Galaxy handle\n> > dependencies, which installs:\n> >\n> > package_r_3_0_1 iuc c5ff6dd33c79 Installed\n> > package_gnu_awk_4_1_0 iuc 52a8268bb49f Installed\n> > package_atlas_3_10 iuc 37ff27ea37ed Installed\n> > package_numpy_1_7 iuc c7ae57300a77 Installed\n> > package_scipy_0_12 iuc 20d1dd0220d7 Installed\n> > macs2 iuc 859c982b1f7f Installed\n> > package_macs2_2_1_0 iuc 4d7ef54c3fa4 Installed\n> >\n> > —\n> > Reply to this email directly or view it on GitHub\n> > <\n> https://github.com/galaxyproject/tools-iuc/issues/104#issuecomment-93504514\n> >\n>\n> > .\n> >\n>\n> —\n> Reply to this email directly or view it on GitHub\n> <https://github.com/galaxyproject/tools-iuc/issues/104#issuecomment-93511454>\n> .\n>\n\n\n\n-- \n- Lance Parsons\n"}}