{"action":"created","issue":{"url":"https://api.github.com/repos/ss3sim/growth_models/issues/11","labels_url":"https://api.github.com/repos/ss3sim/growth_models/issues/11/labels{/name}","comments_url":"https://api.github.com/repos/ss3sim/growth_models/issues/11/comments","events_url":"https://api.github.com/repos/ss3sim/growth_models/issues/11/events","html_url":"https://github.com/ss3sim/growth_models/pull/11","id":57134466,"number":11,"title":"Hake model edits","user":{"login":"seananderson","id":19349,"avatar_url":"https://avatars.githubusercontent.com/u/19349?v=3","gravatar_id":"","url":"https://api.github.com/users/seananderson","html_url":"https://github.com/seananderson","followers_url":"https://api.github.com/users/seananderson/followers","following_url":"https://api.github.com/users/seananderson/following{/other_user}","gists_url":"https://api.github.com/users/seananderson/gists{/gist_id}","starred_url":"https://api.github.com/users/seananderson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/seananderson/subscriptions","organizations_url":"https://api.github.com/users/seananderson/orgs","repos_url":"https://api.github.com/users/seananderson/repos","events_url":"https://api.github.com/users/seananderson/events{/privacy}","received_events_url":"https://api.github.com/users/seananderson/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2015-02-10T06:00:34Z","updated_at":"2015-02-10T22:39:41Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/ss3sim/growth_models/pulls/11","html_url":"https://github.com/ss3sim/growth_models/pull/11","diff_url":"https://github.com/ss3sim/growth_models/pull/11.diff","patch_url":"https://github.com/ss3sim/growth_models/pull/11.patch"},"body":"A series of edits to the hake model setups to bring them in line with the other species. Almost all work was on the hake EM. I have based the parameter estimation around the cod model. \r\n\r\nThis isn't necessarily done yet or fully tested but it looks like there has been some other work happening on the hake models so I thought it would be good to get this merged into the master branch.\r\n\r\nThe matrices of numbers in the EM `.ctl` file are vertically aligned right now and I left them that way while we tweak the models.\r\n\r\nThe EM runs reasonably quickly (under 2 minutes). There's a little file `check.R` in the `hake-em` folder that I've been using for testing. It could be used for other models too."},"comment":{"url":"https://api.github.com/repos/ss3sim/growth_models/issues/comments/73799810","html_url":"https://github.com/ss3sim/growth_models/pull/11#issuecomment-73799810","issue_url":"https://api.github.com/repos/ss3sim/growth_models/issues/11","id":73799810,"user":{"login":"seananderson","id":19349,"avatar_url":"https://avatars.githubusercontent.com/u/19349?v=3","gravatar_id":"","url":"https://api.github.com/users/seananderson","html_url":"https://github.com/seananderson","followers_url":"https://api.github.com/users/seananderson/followers","following_url":"https://api.github.com/users/seananderson/following{/other_user}","gists_url":"https://api.github.com/users/seananderson/gists{/gist_id}","starred_url":"https://api.github.com/users/seananderson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/seananderson/subscriptions","organizations_url":"https://api.github.com/users/seananderson/orgs","repos_url":"https://api.github.com/users/seananderson/repos","events_url":"https://api.github.com/users/seananderson/events{/privacy}","received_events_url":"https://api.github.com/users/seananderson/received_events","type":"User","site_admin":false},"created_at":"2015-02-10T22:39:41Z","updated_at":"2015-02-10T22:39:41Z","body":"But now there are `hak-om`, `hak-em`, `hake-om`, and `hake-em` folders in the master branch. The `hake...` folders conflict with the branch I was working in. Was this a mistake? The CPUE fleet should be in this pull request too. So, should I just keep the changes to the maturity curve in `hak-om` in the master branch and otherwise bring the changes from this pull request over to master?"}}