{"action":"created","issue":{"url":"https://api.github.com/repos/BgeeDB/expression-annotations/issues/62","labels_url":"https://api.github.com/repos/BgeeDB/expression-annotations/issues/62/labels{/name}","comments_url":"https://api.github.com/repos/BgeeDB/expression-annotations/issues/62/comments","events_url":"https://api.github.com/repos/BgeeDB/expression-annotations/issues/62/events","html_url":"https://github.com/BgeeDB/expression-annotations/issues/62","id":111215797,"number":62,"title":"RNAseqLibrary - stageID and anatID review (from check_annot.PROB)","user":{"login":"aechchiki","id":13200013,"avatar_url":"https://avatars.githubusercontent.com/u/13200013?v=3","gravatar_id":"","url":"https://api.github.com/users/aechchiki","html_url":"https://github.com/aechchiki","followers_url":"https://api.github.com/users/aechchiki/followers","following_url":"https://api.github.com/users/aechchiki/following{/other_user}","gists_url":"https://api.github.com/users/aechchiki/gists{/gist_id}","starred_url":"https://api.github.com/users/aechchiki/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/aechchiki/subscriptions","organizations_url":"https://api.github.com/users/aechchiki/orgs","repos_url":"https://api.github.com/users/aechchiki/repos","events_url":"https://api.github.com/users/aechchiki/events{/privacy}","received_events_url":"https://api.github.com/users/aechchiki/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/BgeeDB/expression-annotations/labels/check_annot.PROB","name":"check_annot.PROB","color":"5319e7"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":19,"created_at":"2015-10-13T16:16:08Z","updated_at":"2015-10-19T14:34:14Z","closed_at":null,"body":"1. AcarDv:0000004 > the term is reported in the current ontologies (http://developmental-stage-ontologies.googlecode.com/svn/trunk/src/acardv/acardv.obo)\r\n2.  BtauDv:0000005 > the term is reported in the current ontologies (http://developmental-stage-ontologies.googlecode.com/svn/trunk/src/btaudv/btaudv.obo)\r\n3. FBbt:00003004 > can be replaced with UBERON:0000468 (since it's about the \"whole body tissue\" - and \"whole body except reproductive tractus\") ?\r\n4. FBdv:00005289 > can be replaced with UBERON:0000068 (embryonic stage? annotation reports 0-24h embryos)\r\n5.  FBdv:00005336 > can be replaced with > UBERON:0000069 (larval stage)?\r\n6. Fbdv:00007078 is not reported being obsolete, but it comes from FlyBase (Drosophila stages couldn't be found on the ususl http://developmental-stage-ontologies.googlecode.com/svn/trunk/src/ ): see http://flybase.org/.bin/cvreport.html?cvterm=FBdv:00007078+childdepth=2\r\n7. GgalDv:0000006 >  the term is reported in the current ontologies (http://developmental-stage-ontologies.googlecode.com/svn/trunk/src/ggaldv/ggaldv.obo)\r\n8. GgorDv:0000006 >  the term is reported in the current ontologies (http://developmental-stage-ontologies.googlecode.com/svn/trunk/src/ggordv/ggordv.obo) \r\n9. HsapDv:0000001> the term is reported in the current ontologies (http://developmental-stage-ontologies.googlecode.com/svn/trunk/src/hsapdv/hsapdv.obo)\r\n10. MdomDv:0000006 > the term is reported in the current ontologies (http://developmental-stage-ontologies.googlecode.com/svn/trunk/src/mdomdv/mdomdv.obo)\r\n11. MmulDv:0000022 >  the term is reported in the current ontologies  (http://developmental-stage-ontologies.googlecode.com/svn/trunk/src/mmuldv/mmuldv.obo) \r\n12. MmusDv:0000003 >  the term is reported in the current ontologies  (http://developmental-stage-ontologies.googlecode.com/svn/trunk/src/mmusdv/mmusdv.obo)\r\n13. MmusDv:0000110 >  the term is reported in the current ontologies  (http://developmental-stage-ontologies.googlecode.com/svn/trunk/src/mmusdv/mmusdv.obo)\r\n14. OanaDv:0000004 > the term is reported in the current ontologies (http://developmental-stage-ontologies.googlecode.com/svn/trunk/src/oanadv/oanadv.obo)\r\n15. RnorDv:0000015 > the term is reported in the current ontologies (http://developmental-stage-ontologies.googlecode.com/svn/trunk/src/rnordv/rnordv.obo) \r\n16. SscrDv:000000  > the term is reported in the current ontologies (http://developmental-stage-ontologies.googlecode.com/svn/trunk/src/sscrdv/sscrdv.obo)\r\n\r\n17.UBERON:0003270 > can be replaced by UBERON:0001383 (http://www.ontobee.org/browser/rdf.php?o=UBERON&iri=http://purl.obolibrary.org/obo/UBERON_0001383) - \"has_alternative_id: UBERON:0003270\"\r\n18. UBERON:0019249 (2-cell stage embryo) > the term is reported in Uberon... (http://www.ontobee.org/browser/rdf.php?o=UBERON&iri=http://purl.obolibrary.org/obo/UBERON_0019249)\r\n19. UBERON:0019251 (4-cell stage embryo)  > the term is reported in Uberon... (http://www.ontobee.org/browser/rdf.php?o=UBERON&iri=http://purl.obolibrary.org/obo/UBERON_0019251)\r\n\r\n\r\nSource for dev stages: http://developmental-stage-ontologies.googlecode.com/svn/trunk/src/ \r\nSource for drosophila dev stages: http://flybase.org/.bin/cvreport.html?cvterm=FBdv:00007012+childdepth=2\r\nSource for anatomy IDs: http://www.ontobee.org/browser/index.php?o=UBERON\r\n\r\n(Shall we change our sources maybe?)"},"comment":{"url":"https://api.github.com/repos/BgeeDB/expression-annotations/issues/comments/149233226","html_url":"https://github.com/BgeeDB/expression-annotations/issues/62#issuecomment-149233226","issue_url":"https://api.github.com/repos/BgeeDB/expression-annotations/issues/62","id":149233226,"user":{"login":"mimiblis","id":13200045,"avatar_url":"https://avatars.githubusercontent.com/u/13200045?v=3","gravatar_id":"","url":"https://api.github.com/users/mimiblis","html_url":"https://github.com/mimiblis","followers_url":"https://api.github.com/users/mimiblis/followers","following_url":"https://api.github.com/users/mimiblis/following{/other_user}","gists_url":"https://api.github.com/users/mimiblis/gists{/gist_id}","starred_url":"https://api.github.com/users/mimiblis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mimiblis/subscriptions","organizations_url":"https://api.github.com/users/mimiblis/orgs","repos_url":"https://api.github.com/users/mimiblis/repos","events_url":"https://api.github.com/users/mimiblis/events{/privacy}","received_events_url":"https://api.github.com/users/mimiblis/received_events","type":"User","site_admin":false},"created_at":"2015-10-19T14:34:14Z","updated_at":"2015-10-19T14:34:14Z","body":"I will have a look at it tomorrow morning, no problem @aechichiki"}}