{"action":"created","issue":{"url":"https://api.github.com/repos/genome/genome/issues/909","labels_url":"https://api.github.com/repos/genome/genome/issues/909/labels{/name}","comments_url":"https://api.github.com/repos/genome/genome/issues/909/comments","events_url":"https://api.github.com/repos/genome/genome/issues/909/events","html_url":"https://github.com/genome/genome/pull/909","id":99284555,"number":909,"title":"Add ability to skip exome CNV calling in ClinSeq.","user":{"login":"gatoravi","id":764948,"avatar_url":"https://avatars.githubusercontent.com/u/764948?v=3","gravatar_id":"","url":"https://api.github.com/users/gatoravi","html_url":"https://github.com/gatoravi","followers_url":"https://api.github.com/users/gatoravi/followers","following_url":"https://api.github.com/users/gatoravi/following{/other_user}","gists_url":"https://api.github.com/users/gatoravi/gists{/gist_id}","starred_url":"https://api.github.com/users/gatoravi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gatoravi/subscriptions","organizations_url":"https://api.github.com/users/gatoravi/orgs","repos_url":"https://api.github.com/users/gatoravi/repos","events_url":"https://api.github.com/users/gatoravi/events{/privacy}","received_events_url":"https://api.github.com/users/gatoravi/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-08-05T19:48:57Z","updated_at":"2015-08-05T19:53:17Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/genome/genome/pulls/909","html_url":"https://github.com/genome/genome/pull/909","diff_url":"https://github.com/genome/genome/pull/909.diff","patch_url":"https://github.com/genome/genome/pull/909.patch"},"body":"Sometimes it doesn't make a lot of sense to do copy-number calling for e.g when the data is from targeted capture of a handful of genes etc and we'd like to turn off this step. This pull-request uses a parameter in the clin-seq processing profile to handle this."},"comment":{"url":"https://api.github.com/repos/genome/genome/issues/comments/128129489","html_url":"https://github.com/genome/genome/pull/909#issuecomment-128129489","issue_url":"https://api.github.com/repos/genome/genome/issues/909","id":128129489,"user":{"login":"tmooney","id":187262,"avatar_url":"https://avatars.githubusercontent.com/u/187262?v=3","gravatar_id":"","url":"https://api.github.com/users/tmooney","html_url":"https://github.com/tmooney","followers_url":"https://api.github.com/users/tmooney/followers","following_url":"https://api.github.com/users/tmooney/following{/other_user}","gists_url":"https://api.github.com/users/tmooney/gists{/gist_id}","starred_url":"https://api.github.com/users/tmooney/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tmooney/subscriptions","organizations_url":"https://api.github.com/users/tmooney/orgs","repos_url":"https://api.github.com/users/tmooney/repos","events_url":"https://api.github.com/users/tmooney/events{/privacy}","received_events_url":"https://api.github.com/users/tmooney/received_events","type":"User","site_admin":false},"created_at":"2015-08-05T19:53:17Z","updated_at":"2015-08-05T19:53:17Z","body":"Should all existing processing profiles have this enabled?  Either way, we can backfill after it's merged and the extra parameter will be ready once it's in a snapshot."}}