{"action":"created","issue":{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/416","labels_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/416/labels{/name}","comments_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/416/comments","events_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/416/events","html_url":"https://github.com/galaxyproject/tools-iuc/issues/416","id":118910162,"number":416,"title":"Bug on package_r_3_0_3","user":{"login":"tiagoantao","id":34787,"avatar_url":"https://avatars.githubusercontent.com/u/34787?v=3","gravatar_id":"","url":"https://api.github.com/users/tiagoantao","html_url":"https://github.com/tiagoantao","followers_url":"https://api.github.com/users/tiagoantao/followers","following_url":"https://api.github.com/users/tiagoantao/following{/other_user}","gists_url":"https://api.github.com/users/tiagoantao/gists{/gist_id}","starred_url":"https://api.github.com/users/tiagoantao/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tiagoantao/subscriptions","organizations_url":"https://api.github.com/users/tiagoantao/orgs","repos_url":"https://api.github.com/users/tiagoantao/repos","events_url":"https://api.github.com/users/tiagoantao/events{/privacy}","received_events_url":"https://api.github.com/users/tiagoantao/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":3,"created_at":"2015-11-25T19:46:49Z","updated_at":"2015-12-04T19:32:35Z","closed_at":null,"body":"The LD_LIBRARY_PATH does not include\r\n$INSTALL_DIR/lib\r\nIf you inspect this, there are quite a few libs there. And they are needed (at least on a modern linux).\r\n\r\nFor example this makes the clustered heatmap (visualization) to fail with a missing of libgfortran.so.1"},"comment":{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/comments/162060992","html_url":"https://github.com/galaxyproject/tools-iuc/issues/416#issuecomment-162060992","issue_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/416","id":162060992,"user":{"login":"mvdbeek","id":6804901,"avatar_url":"https://avatars.githubusercontent.com/u/6804901?v=3","gravatar_id":"","url":"https://api.github.com/users/mvdbeek","html_url":"https://github.com/mvdbeek","followers_url":"https://api.github.com/users/mvdbeek/followers","following_url":"https://api.github.com/users/mvdbeek/following{/other_user}","gists_url":"https://api.github.com/users/mvdbeek/gists{/gist_id}","starred_url":"https://api.github.com/users/mvdbeek/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mvdbeek/subscriptions","organizations_url":"https://api.github.com/users/mvdbeek/orgs","repos_url":"https://api.github.com/users/mvdbeek/repos","events_url":"https://api.github.com/users/mvdbeek/events{/privacy}","received_events_url":"https://api.github.com/users/mvdbeek/received_events","type":"User","site_admin":false},"created_at":"2015-12-04T19:32:35Z","updated_at":"2015-12-04T19:32:35Z","body":"@tiagoantao From the directory in your installation path I see that you are on changeset revision [a8438aa1207c](https://iuc@toolshed.g2.bx.psu.edu/repos/iuc/package_r_3_0_3/rev/a8438aa1207c),\r\nso you're supposed to have LD_LIBRARY_PATH pointing to `$INSTALL_DIR/lib/R/lib`.\r\nAny chance a simple update/reinstallation suffices ?\r\nInstalling charts from the toolshed into a clean instance works, and I can produce a clustered heatmap with the test data."}}