{"action":"created","issue":{"url":"https://api.github.com/repos/biocore/qiime/issues/1864","labels_url":"https://api.github.com/repos/biocore/qiime/issues/1864/labels{/name}","comments_url":"https://api.github.com/repos/biocore/qiime/issues/1864/comments","events_url":"https://api.github.com/repos/biocore/qiime/issues/1864/events","html_url":"https://github.com/biocore/qiime/pull/1864","id":54392507,"number":1864,"title":"BLD/ENH: add SortMeRNA, SUMACLUST, and swarm to setup.py","user":{"login":"jairideout","id":1847232,"avatar_url":"https://avatars.githubusercontent.com/u/1847232?v=3","gravatar_id":"","url":"https://api.github.com/users/jairideout","html_url":"https://github.com/jairideout","followers_url":"https://api.github.com/users/jairideout/followers","following_url":"https://api.github.com/users/jairideout/following{/other_user}","gists_url":"https://api.github.com/users/jairideout/gists{/gist_id}","starred_url":"https://api.github.com/users/jairideout/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jairideout/subscriptions","organizations_url":"https://api.github.com/users/jairideout/orgs","repos_url":"https://api.github.com/users/jairideout/repos","events_url":"https://api.github.com/users/jairideout/events{/privacy}","received_events_url":"https://api.github.com/users/jairideout/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/biocore/qiime/milestones/21","labels_url":"https://api.github.com/repos/biocore/qiime/milestones/21/labels","id":530599,"number":21,"title":"QIIME 1.9.0","description":"This will likely be the last minor release under QIIME 1. ","creator":{"login":"jairideout","id":1847232,"avatar_url":"https://avatars.githubusercontent.com/u/1847232?v=3","gravatar_id":"","url":"https://api.github.com/users/jairideout","html_url":"https://github.com/jairideout","followers_url":"https://api.github.com/users/jairideout/followers","following_url":"https://api.github.com/users/jairideout/following{/other_user}","gists_url":"https://api.github.com/users/jairideout/gists{/gist_id}","starred_url":"https://api.github.com/users/jairideout/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jairideout/subscriptions","organizations_url":"https://api.github.com/users/jairideout/orgs","repos_url":"https://api.github.com/users/jairideout/repos","events_url":"https://api.github.com/users/jairideout/events{/privacy}","received_events_url":"https://api.github.com/users/jairideout/received_events","type":"User","site_admin":false},"open_issues":13,"closed_issues":278,"state":"open","created_at":"2014-01-08T19:45:01Z","updated_at":"2015-01-14T23:29:45Z","due_on":"2015-01-21T07:00:00Z","closed_at":null},"comments":1,"created_at":"2015-01-14T23:29:21Z","updated_at":"2015-01-15T01:55:48Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/biocore/qiime/pulls/1864","html_url":"https://github.com/biocore/qiime/pull/1864","diff_url":"https://github.com/biocore/qiime/pull/1864.diff","patch_url":"https://github.com/biocore/qiime/pull/1864.patch"},"body":"This contains the commits in #1828. @gregcaporaso and I pair-programmed this together.\r\n\r\nThis adds SortMeRNA, SUMACLUST, and swarm to setup.py so that they are automatically installed (similar to UCLUST and FastTree) when QIIME is installed.\r\n\r\nWe updated setup.py to be more robust with error-handling and environment cleanup. Thus, if one or more of these programs can't be installed (or any error is encountered during the process), setup.py will continue installing the rest of QIIME. Status messages, stdout, stderr, etc. are provided to the user if an error occurs to aid in debugging.\r\n\r\nWe haven't been able to build SUMACLUST locally on our Macs but we tested this on Ubuntu and it worked.\r\n\r\nWe also added swarm version info to print_qiime_config.py."},"comment":{"url":"https://api.github.com/repos/biocore/qiime/issues/comments/70028214","html_url":"https://github.com/biocore/qiime/pull/1864#issuecomment-70028214","issue_url":"https://api.github.com/repos/biocore/qiime/issues/1864","id":70028214,"user":{"login":"qiime-r2d2","id":3912941,"avatar_url":"https://avatars.githubusercontent.com/u/3912941?v=3","gravatar_id":"","url":"https://api.github.com/users/qiime-r2d2","html_url":"https://github.com/qiime-r2d2","followers_url":"https://api.github.com/users/qiime-r2d2/followers","following_url":"https://api.github.com/users/qiime-r2d2/following{/other_user}","gists_url":"https://api.github.com/users/qiime-r2d2/gists{/gist_id}","starred_url":"https://api.github.com/users/qiime-r2d2/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/qiime-r2d2/subscriptions","organizations_url":"https://api.github.com/users/qiime-r2d2/orgs","repos_url":"https://api.github.com/users/qiime-r2d2/repos","events_url":"https://api.github.com/users/qiime-r2d2/events{/privacy}","received_events_url":"https://api.github.com/users/qiime-r2d2/received_events","type":"User","site_admin":false},"created_at":"2015-01-15T01:55:48Z","updated_at":"2015-01-15T01:55:48Z","body":"Build results will soon be (or already are) available at: http://ci.qiime.org/job/qiime-github-pr/1534/"}}