{"action":"created","issue":{"url":"https://api.github.com/repos/arq5x/lumpy-sv/issues/71","labels_url":"https://api.github.com/repos/arq5x/lumpy-sv/issues/71/labels{/name}","comments_url":"https://api.github.com/repos/arq5x/lumpy-sv/issues/71/comments","events_url":"https://api.github.com/repos/arq5x/lumpy-sv/issues/71/events","html_url":"https://github.com/arq5x/lumpy-sv/issues/71","id":70001332,"number":71,"title":"Merging VCFs output by lumpy express.","user":{"login":"smilefreak","id":605678,"avatar_url":"https://avatars.githubusercontent.com/u/605678?v=3","gravatar_id":"","url":"https://api.github.com/users/smilefreak","html_url":"https://github.com/smilefreak","followers_url":"https://api.github.com/users/smilefreak/followers","following_url":"https://api.github.com/users/smilefreak/following{/other_user}","gists_url":"https://api.github.com/users/smilefreak/gists{/gist_id}","starred_url":"https://api.github.com/users/smilefreak/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/smilefreak/subscriptions","organizations_url":"https://api.github.com/users/smilefreak/orgs","repos_url":"https://api.github.com/users/smilefreak/repos","events_url":"https://api.github.com/users/smilefreak/events{/privacy}","received_events_url":"https://api.github.com/users/smilefreak/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-04-22T02:21:10Z","updated_at":"2015-04-22T02:25:59Z","closed_at":null,"body":"Hi,\r\n\r\nI have been trying to merge the VCFs output from lumpyexpress. \r\n\r\nBut I get the following error in l_merge.py\r\n\r\nI realise this is because the PRPOS is missing from the info line of VCF file output by lumpy.\r\n\r\n```\r\nFile \"/Volumes/BiochemXsan/scratch/merrimanlab/james/CNV_exomes/lumpy-sv/scripts/l_bp.py\", line 147, in __init__\r\n    self.p_l = [float(x) for x in m['PRPOS'].split(',')]\r\n```\r\n\r\nDoes anyone have a solution to this problem?\r\n\r\nThanks."},"comment":{"url":"https://api.github.com/repos/arq5x/lumpy-sv/issues/comments/95000800","html_url":"https://github.com/arq5x/lumpy-sv/issues/71#issuecomment-95000800","issue_url":"https://api.github.com/repos/arq5x/lumpy-sv/issues/71","id":95000800,"user":{"login":"smilefreak","id":605678,"avatar_url":"https://avatars.githubusercontent.com/u/605678?v=3","gravatar_id":"","url":"https://api.github.com/users/smilefreak","html_url":"https://github.com/smilefreak","followers_url":"https://api.github.com/users/smilefreak/followers","following_url":"https://api.github.com/users/smilefreak/following{/other_user}","gists_url":"https://api.github.com/users/smilefreak/gists{/gist_id}","starred_url":"https://api.github.com/users/smilefreak/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/smilefreak/subscriptions","organizations_url":"https://api.github.com/users/smilefreak/orgs","repos_url":"https://api.github.com/users/smilefreak/repos","events_url":"https://api.github.com/users/smilefreak/events{/privacy}","received_events_url":"https://api.github.com/users/smilefreak/received_events","type":"User","site_admin":false},"created_at":"2015-04-22T02:25:59Z","updated_at":"2015-04-22T02:25:59Z","body":"Great thanks."}}