{"action":"created","issue":{"url":"https://api.github.com/repos/broadinstitute/gatk/issues/1299","labels_url":"https://api.github.com/repos/broadinstitute/gatk/issues/1299/labels{/name}","comments_url":"https://api.github.com/repos/broadinstitute/gatk/issues/1299/comments","events_url":"https://api.github.com/repos/broadinstitute/gatk/issues/1299/events","html_url":"https://github.com/broadinstitute/gatk/issues/1299","id":121280659,"number":1299,"title":"can we create crai indices for cram files","user":{"login":"akiezun","id":1993519,"avatar_url":"https://avatars.githubusercontent.com/u/1993519?v=3","gravatar_id":"","url":"https://api.github.com/users/akiezun","html_url":"https://github.com/akiezun","followers_url":"https://api.github.com/users/akiezun/followers","following_url":"https://api.github.com/users/akiezun/following{/other_user}","gists_url":"https://api.github.com/users/akiezun/gists{/gist_id}","starred_url":"https://api.github.com/users/akiezun/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/akiezun/subscriptions","organizations_url":"https://api.github.com/users/akiezun/orgs","repos_url":"https://api.github.com/users/akiezun/repos","events_url":"https://api.github.com/users/akiezun/events{/privacy}","received_events_url":"https://api.github.com/users/akiezun/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/broadinstitute/gatk/labels/AlphaTesting","name":"AlphaTesting","color":"e11d21"},{"url":"https://api.github.com/repos/broadinstitute/gatk/labels/enhancement","name":"enhancement","color":"009800"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-12-09T16:08:50Z","updated_at":"2015-12-09T23:17:59Z","closed_at":null,"body":"we create bai indices when `--createOutputBamIndex true` but crai is the preferred index. Can we create those?"},"comment":{"url":"https://api.github.com/repos/broadinstitute/gatk/issues/comments/163433420","html_url":"https://github.com/broadinstitute/gatk/issues/1299#issuecomment-163433420","issue_url":"https://api.github.com/repos/broadinstitute/gatk/issues/1299","id":163433420,"user":{"login":"droazen","id":798637,"avatar_url":"https://avatars.githubusercontent.com/u/798637?v=3","gravatar_id":"","url":"https://api.github.com/users/droazen","html_url":"https://github.com/droazen","followers_url":"https://api.github.com/users/droazen/followers","following_url":"https://api.github.com/users/droazen/following{/other_user}","gists_url":"https://api.github.com/users/droazen/gists{/gist_id}","starred_url":"https://api.github.com/users/droazen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/droazen/subscriptions","organizations_url":"https://api.github.com/users/droazen/orgs","repos_url":"https://api.github.com/users/droazen/repos","events_url":"https://api.github.com/users/droazen/events{/privacy}","received_events_url":"https://api.github.com/users/droazen/received_events","type":"User","site_admin":false},"created_at":"2015-12-09T23:17:59Z","updated_at":"2015-12-09T23:17:59Z","body":"beta"}}