{"action":"created","issue":{"url":"https://api.github.com/repos/sanger-pathogens/circlator/issues/30","labels_url":"https://api.github.com/repos/sanger-pathogens/circlator/issues/30/labels{/name}","comments_url":"https://api.github.com/repos/sanger-pathogens/circlator/issues/30/comments","events_url":"https://api.github.com/repos/sanger-pathogens/circlator/issues/30/events","html_url":"https://github.com/sanger-pathogens/circlator/issues/30","id":101541932,"number":30,"title":"Numpy for python3","user":{"login":"bforde","id":4607025,"avatar_url":"https://avatars.githubusercontent.com/u/4607025?v=3","gravatar_id":"","url":"https://api.github.com/users/bforde","html_url":"https://github.com/bforde","followers_url":"https://api.github.com/users/bforde/followers","following_url":"https://api.github.com/users/bforde/following{/other_user}","gists_url":"https://api.github.com/users/bforde/gists{/gist_id}","starred_url":"https://api.github.com/users/bforde/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bforde/subscriptions","organizations_url":"https://api.github.com/users/bforde/orgs","repos_url":"https://api.github.com/users/bforde/repos","events_url":"https://api.github.com/users/bforde/events{/privacy}","received_events_url":"https://api.github.com/users/bforde/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2015-08-18T00:58:55Z","updated_at":"2015-09-07T04:48:37Z","closed_at":"2015-09-07T04:48:37Z","body":"I am trying to install circlator on Ubuntu 14.04\r\nI am having an issue with numpy for python3\r\n\r\nWhen installing circlator using brew I get the following error\r\n\r\n```Error! numpy for Python3 not found.\r\nPlease install it (e.g. apt-get install python3-numpy)```\r\n\r\n```sudo apt-get install python3.2-numpy \r\nReading package lists... Done\r\nBuilding dependency tree       \r\nReading state information... Done\r\npython3-numpy is already the newest version.\r\n0 to upgrade, 0 to newly install, 0 to remove and 37 not to upgrade.```\r\n\r\nIf I try to install circlator via pip I get a similar error\r\n\r\n```pip install circlator                                                                                                                                                                                                                                                               \r\nDownloading/unpacking circlator\r\n  Downloading circlator-0.16.0.tar.gz (935kB): 935kB downloaded\r\n  Running setup.py (path:/tmp/pip_build_brian/circlator/setup.py) egg_info for package circlator\r\n    \r\nDownloading/unpacking openpyxl (from circlator)\r\n  Downloading openpyxl-2.2.5.tar.gz (108kB): 108kB downloaded\r\n  Running setup.py (path:/tmp/pip_build_brian/openpyxl/setup.py) egg_info for package openpyxl\r\n    \r\n    no previously-included directories found matching 'openpyxl/tests'\r\n    no previously-included directories found matching 'openpyxl/sample'\r\n    no previously-included directories found matching 'openpyxl/benchmarks'\r\n    no previously-included directories found matching 'openpyxl/classify'\r\n    warning: no previously-included files matching 'test_*.py' found under directory 'openpyxl'\r\n    warning: no previously-included files matching 'tests/*.py' found under directory 'openpyxl'\r\nDownloading/unpacking pyfastaq>=3.6.0 (from circlator)\r\n  Downloading pyfastaq-3.6.0.tar.gz (48kB): 48kB downloaded\r\n  Running setup.py (path:/tmp/pip_build_brian/pyfastaq/setup.py) egg_info for package pyfastaq\r\n    Traceback (most recent call last):\r\n      File \"<string>\", line 17, in <module>\r\n      File \"/tmp/pip_build_brian/pyfastaq/setup.py\", line 10\r\n        print(\"Error! numpy for Python3 not found.\\nPlease install it (e.g. apt-get install python3-numpy)\", file=sys.stderr)\r\n                                                                                                                 ^\r\n    SyntaxError: invalid syntax\r\n    Complete output from command python setup.py egg_info:\r\n    Traceback (most recent call last):\r\n\r\n  File \"<string>\", line 17, in <module>\r\n\r\n  File \"/tmp/pip_build_brian/pyfastaq/setup.py\", line 10\r\n\r\n    print(\"Error! numpy for Python3 not found.\\nPlease install it (e.g. apt-get install python3-numpy)\", file=sys.stderr)\r\n\r\n                                                                                                             ^\r\n\r\nSyntaxError: invalid syntax\r\n\r\n----------------------------------------\r\nCleaning up...\r\nCommand python setup.py egg_info failed with error code 1 in /tmp/pip_build_brian/pyfastaq\r\nStoring debug log for failure in /tmp/tmpx5JulT ```\r\n\r\n\r\n\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/sanger-pathogens/circlator/issues/comments/138185655","html_url":"https://github.com/sanger-pathogens/circlator/issues/30#issuecomment-138185655","issue_url":"https://api.github.com/repos/sanger-pathogens/circlator/issues/30","id":138185655,"user":{"login":"bforde","id":4607025,"avatar_url":"https://avatars.githubusercontent.com/u/4607025?v=3","gravatar_id":"","url":"https://api.github.com/users/bforde","html_url":"https://github.com/bforde","followers_url":"https://api.github.com/users/bforde/followers","following_url":"https://api.github.com/users/bforde/following{/other_user}","gists_url":"https://api.github.com/users/bforde/gists{/gist_id}","starred_url":"https://api.github.com/users/bforde/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bforde/subscriptions","organizations_url":"https://api.github.com/users/bforde/orgs","repos_url":"https://api.github.com/users/bforde/repos","events_url":"https://api.github.com/users/bforde/events{/privacy}","received_events_url":"https://api.github.com/users/bforde/received_events","type":"User","site_admin":false},"created_at":"2015-09-07T04:48:37Z","updated_at":"2015-09-07T04:48:37Z","body":"Hi Torsten,\r\nunfortunately your method did not work for me either\r\n\r\nHi Martin\r\nIt works when using a Venv as you describe\r\n\r\ncheers\r\n\r\nBrian \r\n"}}