{"action":"created","issue":{"url":"https://api.github.com/repos/genome/genome-snapshot-deps/issues/27","labels_url":"https://api.github.com/repos/genome/genome-snapshot-deps/issues/27/labels{/name}","comments_url":"https://api.github.com/repos/genome/genome-snapshot-deps/issues/27/comments","events_url":"https://api.github.com/repos/genome/genome-snapshot-deps/issues/27/events","html_url":"https://github.com/genome/genome-snapshot-deps/pull/27","id":65500472,"number":27,"title":"introduce debian package for vcflib","user":{"login":"indraniel","id":42710,"avatar_url":"https://avatars.githubusercontent.com/u/42710?v=3","gravatar_id":"","url":"https://api.github.com/users/indraniel","html_url":"https://github.com/indraniel","followers_url":"https://api.github.com/users/indraniel/followers","following_url":"https://api.github.com/users/indraniel/following{/other_user}","gists_url":"https://api.github.com/users/indraniel/gists{/gist_id}","starred_url":"https://api.github.com/users/indraniel/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/indraniel/subscriptions","organizations_url":"https://api.github.com/users/indraniel/orgs","repos_url":"https://api.github.com/users/indraniel/repos","events_url":"https://api.github.com/users/indraniel/events{/privacy}","received_events_url":"https://api.github.com/users/indraniel/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":5,"created_at":"2015-03-31T17:07:53Z","updated_at":"2015-04-01T16:53:22Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/genome/genome-snapshot-deps/pulls/27","html_url":"https://github.com/genome/genome-snapshot-deps/pull/27","diff_url":"https://github.com/genome/genome-snapshot-deps/pull/27.diff","patch_url":"https://github.com/genome/genome-snapshot-deps/pull/27.patch"},"body":"This is a pull request to add [vcflib][1] as a dependency to GMS.  A customized debian package, `vcflib-tgi1.0`, was created based upon the code changes made in the [debian branch of genome-vendor/vcflib][2].\r\n\r\nNothing in [genome][3] depends on this package yet, but it will in the future.  Please see our internal JIRA issue [BIO-1387][4] for more information.\r\n\r\nThe package has been placed into our internal APT repo.  You can test its installation by executing the following command on our workstations:\r\n\r\n    apt-get install vcflib-tgi1.0\r\n\r\nHere's some additional package details:\r\n\r\n```\r\n$ apt-cache show vcflib-tgi1.0\r\nPackage: vcflib-tgi1.0\r\nVersion: 2015.03.13-1\r\nArchitecture: amd64\r\nMaintainer: Genome Developers <genome-dev@genome.wustl.edu>\r\nInstalled-Size: 42944\r\nDepends: libc6 (>= 2.7), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.2.0.2), python2.7, perl, libsqlite3-0, r-base, r-cran-ggplot2, r-cran-plyr\r\nHomepage: https://github.com/ekg/vcflib\r\nPriority: optional\r\nSection: science\r\nFilename: pool/main/v/vcflib-tgi1.0/vcflib-tgi1.0_2015.03.13-1_amd64.deb\r\nSize: 19052480\r\nSHA256: 9e376b0fa119d029ee1e42a7c2f663e62a30395f19ef0f52973eecb043374b00\r\nSHA1: 1dac857110b9d271cd8455a59736a160f72f4855\r\nMD5sum: 16d50df68cc9db6cb32d68624b712353\r\nDescription: tools for parsing and manipulating VCF files\r\n vcflib is a suite of programs (C++, bash, perl, R & python) for parsing\r\n and manipulating Variant Call Format (VCF) files used in genomic studies.\r\n .\r\n This package is a custom Genome Institute at Washington University in\r\n St. Louis (TGI) edition of https://github.com/ekg/vcflib.  It is based on\r\n git commit \"b1e9b31d2d95f957f86cdfd1e7c9ec25b4950ee8\" of that repository.\r\n```\r\n\r\nThe files that the package installs are listed in the [debian install file][5].\r\n\r\nLet me know if there's any additional information I need to provide, or if I've missed any protocol in the APIPE debian package creation and deployment process.\r\n\r\n[1]: https://github.com/ekg/vcflib\r\n[2]: https://github.com/genome-vendor/vcflib/tree/debian\r\n[3]: https://github.com/genome/genome\r\n[4]: https://jira.gsc.wustl.edu/browse/BIO-1387\r\n[5]: https://github.com/genome-vendor/vcflib/blob/debian/debian/install"},"comment":{"url":"https://api.github.com/repos/genome/genome-snapshot-deps/issues/comments/88552601","html_url":"https://github.com/genome/genome-snapshot-deps/pull/27#issuecomment-88552601","issue_url":"https://api.github.com/repos/genome/genome-snapshot-deps/issues/27","id":88552601,"user":{"login":"ebelter","id":139389,"avatar_url":"https://avatars.githubusercontent.com/u/139389?v=3","gravatar_id":"","url":"https://api.github.com/users/ebelter","html_url":"https://github.com/ebelter","followers_url":"https://api.github.com/users/ebelter/followers","following_url":"https://api.github.com/users/ebelter/following{/other_user}","gists_url":"https://api.github.com/users/ebelter/gists{/gist_id}","starred_url":"https://api.github.com/users/ebelter/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ebelter/subscriptions","organizations_url":"https://api.github.com/users/ebelter/orgs","repos_url":"https://api.github.com/users/ebelter/repos","events_url":"https://api.github.com/users/ebelter/events{/privacy}","received_events_url":"https://api.github.com/users/ebelter/received_events","type":"User","site_admin":false},"created_at":"2015-04-01T16:53:22Z","updated_at":"2015-04-01T16:53:22Z","body":"+1"}}