{"action":"created","issue":{"url":"https://api.github.com/repos/Genomon-Project/Genomon/issues/61","labels_url":"https://api.github.com/repos/Genomon-Project/Genomon/issues/61/labels{/name}","comments_url":"https://api.github.com/repos/Genomon-Project/Genomon/issues/61/comments","events_url":"https://api.github.com/repos/Genomon-Project/Genomon/issues/61/events","html_url":"https://github.com/Genomon-Project/Genomon/issues/61","id":99366897,"number":61,"title":"sampleプロジェクト実行中に 'pipeline.stage_7' でエラー発生","user":{"login":"aokad","id":13672949,"avatar_url":"https://avatars.githubusercontent.com/u/13672949?v=3","gravatar_id":"","url":"https://api.github.com/users/aokad","html_url":"https://github.com/aokad","followers_url":"https://api.github.com/users/aokad/followers","following_url":"https://api.github.com/users/aokad/following{/other_user}","gists_url":"https://api.github.com/users/aokad/gists{/gist_id}","starred_url":"https://api.github.com/users/aokad/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/aokad/subscriptions","organizations_url":"https://api.github.com/users/aokad/orgs","repos_url":"https://api.github.com/users/aokad/repos","events_url":"https://api.github.com/users/aokad/events{/privacy}","received_events_url":"https://api.github.com/users/aokad/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-08-06T06:23:25Z","updated_at":"2015-08-17T02:09:46Z","closed_at":null,"body":"sampleプロジェクト実行中に `Task enters queue = 'helpers.wgs_pipeline.stage_7` でエラーが発生し終了しました。\r\n以下はエラーが発生した `bam_stats_calc_xxx` のエラーログです。\r\n\r\n<pre>\r\n+ /home/w3varann/tools/PCAP-core-dev.20150511/bin/bam_stats.pl --threads 4 -i ./results/small_SRR330441/out/bam/small_SRR330441_markdup.bam -o ./results/small_SRR330441/out/summary/small_SRR330441.txt.1\r\nIPC::System::Simple required for Fatalised/autodying system() at /home/w3varann/tools/PCAP-core-dev.20150511/bin/bam_stats.pl line 24\r\nBEGIN failed--compilation aborted at /home/w3varann/tools/PCAP-core-dev.20150511/bin/bam_stats.pl line 24.\r\n+ check_error 2\r\n+ '[' 2 -ne 0 ']'\r\n+ echo 'FATAL ERROR: pipeline script'\r\n+ echo 'ERROR CODE: 2'\r\n+ exit 2\r\n</pre>\r\n"},"comment":{"url":"https://api.github.com/repos/Genomon-Project/Genomon/issues/comments/131657656","html_url":"https://github.com/Genomon-Project/Genomon/issues/61#issuecomment-131657656","issue_url":"https://api.github.com/repos/Genomon-Project/Genomon/issues/61","id":131657656,"user":{"login":"eigoshimizu","id":8177745,"avatar_url":"https://avatars.githubusercontent.com/u/8177745?v=3","gravatar_id":"","url":"https://api.github.com/users/eigoshimizu","html_url":"https://github.com/eigoshimizu","followers_url":"https://api.github.com/users/eigoshimizu/followers","following_url":"https://api.github.com/users/eigoshimizu/following{/other_user}","gists_url":"https://api.github.com/users/eigoshimizu/gists{/gist_id}","starred_url":"https://api.github.com/users/eigoshimizu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/eigoshimizu/subscriptions","organizations_url":"https://api.github.com/users/eigoshimizu/orgs","repos_url":"https://api.github.com/users/eigoshimizu/repos","events_url":"https://api.github.com/users/eigoshimizu/events{/privacy}","received_events_url":"https://api.github.com/users/eigoshimizu/received_events","type":"User","site_admin":false},"created_at":"2015-08-17T02:09:46Z","updated_at":"2015-08-17T02:09:46Z","body":"変更を push しました。"}}