{"action":"created","issue":{"url":"https://api.github.com/repos/galaxyproject/galaxy/issues/809","labels_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/809/labels{/name}","comments_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/809/comments","events_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/809/events","html_url":"https://github.com/galaxyproject/galaxy/issues/809","id":108876264,"number":809,"title":"Tool Command Isolation","user":{"login":"jmchilton","id":216771,"avatar_url":"https://avatars.githubusercontent.com/u/216771?v=3","gravatar_id":"","url":"https://api.github.com/users/jmchilton","html_url":"https://github.com/jmchilton","followers_url":"https://api.github.com/users/jmchilton/followers","following_url":"https://api.github.com/users/jmchilton/following{/other_user}","gists_url":"https://api.github.com/users/jmchilton/gists{/gist_id}","starred_url":"https://api.github.com/users/jmchilton/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jmchilton/subscriptions","organizations_url":"https://api.github.com/users/jmchilton/orgs","repos_url":"https://api.github.com/users/jmchilton/repos","events_url":"https://api.github.com/users/jmchilton/events{/privacy}","received_events_url":"https://api.github.com/users/jmchilton/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/galaxyproject/galaxy/labels/Bug","name":"Bug","color":"fc2929"},{"url":"https://api.github.com/repos/galaxyproject/galaxy/labels/Enhancement","name":"Enhancement","color":"84b6eb"}],"state":"open","locked":false,"assignee":{"login":"jmchilton","id":216771,"avatar_url":"https://avatars.githubusercontent.com/u/216771?v=3","gravatar_id":"","url":"https://api.github.com/users/jmchilton","html_url":"https://github.com/jmchilton","followers_url":"https://api.github.com/users/jmchilton/followers","following_url":"https://api.github.com/users/jmchilton/following{/other_user}","gists_url":"https://api.github.com/users/jmchilton/gists{/gist_id}","starred_url":"https://api.github.com/users/jmchilton/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jmchilton/subscriptions","organizations_url":"https://api.github.com/users/jmchilton/orgs","repos_url":"https://api.github.com/users/jmchilton/repos","events_url":"https://api.github.com/users/jmchilton/events{/privacy}","received_events_url":"https://api.github.com/users/jmchilton/received_events","type":"User","site_admin":false},"milestone":null,"comments":5,"created_at":"2015-09-29T14:02:15Z","updated_at":"2015-10-11T16:43:32Z","closed_at":null,"body":"There is a beta option - ``enable_beta_tool_command_isolation`` that separates the tool command environment from the metadata collection environment in jobs so that they can have independent dependencies.\r\n\r\nIt is still in beta but at some point it should be the default. This issue is tracking progress toward that.\r\n\r\n - [ ] From @bgruening \"Is it worth to include requirement tags into all converters and try/except around the `import egg` lines?\".\r\n - [ ] The metadata evaluation should probably source samtools and bcftools env files if available.\r\n"},"comment":{"url":"https://api.github.com/repos/galaxyproject/galaxy/issues/comments/147217096","html_url":"https://github.com/galaxyproject/galaxy/issues/809#issuecomment-147217096","issue_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/809","id":147217096,"user":{"login":"bgruening","id":469983,"avatar_url":"https://avatars.githubusercontent.com/u/469983?v=3","gravatar_id":"","url":"https://api.github.com/users/bgruening","html_url":"https://github.com/bgruening","followers_url":"https://api.github.com/users/bgruening/followers","following_url":"https://api.github.com/users/bgruening/following{/other_user}","gists_url":"https://api.github.com/users/bgruening/gists{/gist_id}","starred_url":"https://api.github.com/users/bgruening/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bgruening/subscriptions","organizations_url":"https://api.github.com/users/bgruening/orgs","repos_url":"https://api.github.com/users/bgruening/repos","events_url":"https://api.github.com/users/bgruening/events{/privacy}","received_events_url":"https://api.github.com/users/bgruening/received_events","type":"User","site_admin":false},"created_at":"2015-10-11T16:43:32Z","updated_at":"2015-10-11T16:43:32Z","body":"I think this is fixed now. Thanks!"}}