{"action":"closed","issue":{"url":"https://api.github.com/repos/ksahlin/BESST/issues/19","labels_url":"https://api.github.com/repos/ksahlin/BESST/issues/19/labels{/name}","comments_url":"https://api.github.com/repos/ksahlin/BESST/issues/19/comments","events_url":"https://api.github.com/repos/ksahlin/BESST/issues/19/events","html_url":"https://github.com/ksahlin/BESST/issues/19","id":104035823,"number":19,"title":"KeyError: 11012","user":{"login":"fbemm","id":8361254,"avatar_url":"https://avatars.githubusercontent.com/u/8361254?v=3","gravatar_id":"","url":"https://api.github.com/users/fbemm","html_url":"https://github.com/fbemm","followers_url":"https://api.github.com/users/fbemm/followers","following_url":"https://api.github.com/users/fbemm/following{/other_user}","gists_url":"https://api.github.com/users/fbemm/gists{/gist_id}","starred_url":"https://api.github.com/users/fbemm/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fbemm/subscriptions","organizations_url":"https://api.github.com/users/fbemm/orgs","repos_url":"https://api.github.com/users/fbemm/repos","events_url":"https://api.github.com/users/fbemm/events{/privacy}","received_events_url":"https://api.github.com/users/fbemm/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-08-31T11:32:41Z","updated_at":"2015-10-28T22:17:56Z","closed_at":"2015-10-28T22:17:56Z","body":"I wanted to test the new BESST version that can deal with PE reads in MP datatsets.\r\n\r\nRunning BESST (developer version) results in a crash:\r\n\r\nConstructed contig graph. Start BESST algorithm for creating scaffolds. \r\nTraceback (most recent call last):\r\n  File \"/besst/runBESST\", line 391, in <module>\r\n    main(args)\r\n  File \"/besst/runBESST\", line 186, in main\r\n    MS.Algorithm(G, G_prime, Contigs, small_contigs, Scaffolds, small_scaffolds, Information, param)   # Make scaffolds, store the complex areas (consisting of contig/scaffold) in F, store the created scaffolds in Scaffolds, update Contigs\r\n  File \"/besst/BESST/MakeScaffolds.py\", line 86, in Algorithm\r\n    (Contigs, Scaffolds, param) = NewContigsScaffolds(G, G_prime, Contigs, small_contigs, Scaffolds, small_scaffolds, Information, dValuesTable, param, already_visited)   #step5\r\n  File \"/besst/BESST/MakeScaffolds.py\", line 283, in NewContigsScaffolds\r\n    PROWithinScaf(G, G_prime, Contigs, small_contigs, Scaffolds, small_scaffolds, param, new_scaffold_, dValuesTable, already_visited)\r\n  File \"/besst/BESST/MakeScaffolds.py\", line 534, in PROWithinScaf\r\n    G_, path = estimate_path_gaps(Contigs, small_contigs, high_score_path_copy,Scaffolds,small_scaffolds, G_prime,param)\r\n  File \"/besst/BESST/MakeScaffolds.py\", line 1018, in estimate_path_gaps\r\n    constraint_pairs = kmer_overlaps(path, Scaffolds, small_scaffolds, Contigs, small_contigs)\r\n  File \"/besst/BESST/MakeScaffolds.py\", line 891, in kmer_overlaps\r\n    ctg = Scaffolds[label[0]].contigs[-1]\r\nKeyError: 11012\r\n"}}