{"action":"created","issue":{"url":"https://api.github.com/repos/MDAnalysis/mdanalysis/issues/375","labels_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/issues/375/labels{/name}","comments_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/issues/375/comments","events_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/issues/375/events","html_url":"https://github.com/MDAnalysis/mdanalysis/pull/375","id":98639482,"number":375,"title":"WIP: Cython port of contact map functions","user":{"login":"kain88-de","id":4302678,"avatar_url":"https://avatars.githubusercontent.com/u/4302678?v=3","gravatar_id":"","url":"https://api.github.com/users/kain88-de","html_url":"https://github.com/kain88-de","followers_url":"https://api.github.com/users/kain88-de/followers","following_url":"https://api.github.com/users/kain88-de/following{/other_user}","gists_url":"https://api.github.com/users/kain88-de/gists{/gist_id}","starred_url":"https://api.github.com/users/kain88-de/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kain88-de/subscriptions","organizations_url":"https://api.github.com/users/kain88-de/orgs","repos_url":"https://api.github.com/users/kain88-de/repos","events_url":"https://api.github.com/users/kain88-de/events{/privacy}","received_events_url":"https://api.github.com/users/kain88-de/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/MDAnalysis/mdanalysis/milestones/3","html_url":"https://github.com/MDAnalysis/mdanalysis/milestones/0.11","labels_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/milestones/3/labels","id":1076757,"number":3,"title":"0.11","description":"API overhaul release","creator":{"login":"richardjgowers","id":9249543,"avatar_url":"https://avatars.githubusercontent.com/u/9249543?v=3","gravatar_id":"","url":"https://api.github.com/users/richardjgowers","html_url":"https://github.com/richardjgowers","followers_url":"https://api.github.com/users/richardjgowers/followers","following_url":"https://api.github.com/users/richardjgowers/following{/other_user}","gists_url":"https://api.github.com/users/richardjgowers/gists{/gist_id}","starred_url":"https://api.github.com/users/richardjgowers/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/richardjgowers/subscriptions","organizations_url":"https://api.github.com/users/richardjgowers/orgs","repos_url":"https://api.github.com/users/richardjgowers/repos","events_url":"https://api.github.com/users/richardjgowers/events{/privacy}","received_events_url":"https://api.github.com/users/richardjgowers/received_events","type":"User","site_admin":false},"open_issues":4,"closed_issues":52,"state":"open","created_at":"2015-04-21T09:19:32Z","updated_at":"2015-08-04T07:58:16Z","due_on":"2015-08-07T06:00:00Z","closed_at":null},"comments":13,"created_at":"2015-08-02T21:43:07Z","updated_at":"2015-08-04T17:13:30Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/MDAnalysis/mdanalysis/pulls/375","html_url":"https://github.com/MDAnalysis/mdanalysis/pull/375","diff_url":"https://github.com/MDAnalysis/mdanalysis/pull/375.diff","patch_url":"https://github.com/MDAnalysis/mdanalysis/pull/375.patch"},"body":"I want to fix #264. The non PBC version is already implemented in Cython and the tests are passing as well. The Cython-implementation is also faster using the 1Q0W protein.\r\n\r\nPorting the PBC version I noticed that there are no tests for it. I added a test and the test suite is still passing. But I'm not sure if the test I have added is run. Btw I'm new to nose is there a way to specify a subset of tests that I want to run instead of executing the whole test-suite all the time?\r\n\r\nIf someone can help me get the test-cases for the PBC-case running I will also port the PBC version.\r\n\r\n---------\r\n\r\nHere is a short description how I run the test-suite since I couldn't find up-to-date information how to set-up a dev environment or run unit-tests.\r\n\r\nFor testing I'm using the approach defined in the `travis.yml`, but I installed all dependencies via pip.\r\nAfter each change in either the package or testsuite folder I reinstalled them with `pip install --upgrade <folder>/`\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/MDAnalysis/mdanalysis/issues/comments/127678965","html_url":"https://github.com/MDAnalysis/mdanalysis/pull/375#issuecomment-127678965","issue_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/issues/375","id":127678965,"user":{"login":"orbeckst","id":237980,"avatar_url":"https://avatars.githubusercontent.com/u/237980?v=3","gravatar_id":"","url":"https://api.github.com/users/orbeckst","html_url":"https://github.com/orbeckst","followers_url":"https://api.github.com/users/orbeckst/followers","following_url":"https://api.github.com/users/orbeckst/following{/other_user}","gists_url":"https://api.github.com/users/orbeckst/gists{/gist_id}","starred_url":"https://api.github.com/users/orbeckst/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/orbeckst/subscriptions","organizations_url":"https://api.github.com/users/orbeckst/orgs","repos_url":"https://api.github.com/users/orbeckst/repos","events_url":"https://api.github.com/users/orbeckst/events{/privacy}","received_events_url":"https://api.github.com/users/orbeckst/received_events","type":"User","site_admin":false},"created_at":"2015-08-04T17:13:30Z","updated_at":"2015-08-04T17:13:30Z","body":"Docs are not generated automatically (yet). There is a page in the wiki outlining the procedure but in the end someone with write access has to merge the develop branch with docs into the gh-pages branch. \n\n--\nOliver Beckstein\nemail: orbeckst@gmail.com\nskype: orbeckst\n\n\nAm Aug 4, 2015 um 2:55 schrieb kain88-de <notifications@github.com>:\n\n> Btw should I regenerate the documentation or is this done automatically with a git-hook when this PR is merged?\n> \n> —\n> Reply to this email directly or view it on GitHub.\n> \n"}}