{"action":"created","issue":{"url":"https://api.github.com/repos/monarch-initiative/dipper/issues/39","labels_url":"https://api.github.com/repos/monarch-initiative/dipper/issues/39/labels{/name}","comments_url":"https://api.github.com/repos/monarch-initiative/dipper/issues/39/comments","events_url":"https://api.github.com/repos/monarch-initiative/dipper/issues/39/events","html_url":"https://github.com/monarch-initiative/dipper/issues/39","id":55208637,"number":39,"title":"add CTD gene-pathway associations","user":{"login":"nlwashington","id":5124411,"avatar_url":"https://avatars.githubusercontent.com/u/5124411?v=3","gravatar_id":"","url":"https://api.github.com/users/nlwashington","html_url":"https://github.com/nlwashington","followers_url":"https://api.github.com/users/nlwashington/followers","following_url":"https://api.github.com/users/nlwashington/following{/other_user}","gists_url":"https://api.github.com/users/nlwashington/gists{/gist_id}","starred_url":"https://api.github.com/users/nlwashington/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nlwashington/subscriptions","organizations_url":"https://api.github.com/users/nlwashington/orgs","repos_url":"https://api.github.com/users/nlwashington/repos","events_url":"https://api.github.com/users/nlwashington/events{/privacy}","received_events_url":"https://api.github.com/users/nlwashington/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/monarch-initiative/dipper/labels/ctd","name":"ctd","color":"dd7aea"},{"url":"https://api.github.com/repos/monarch-initiative/dipper/labels/data","name":"data","color":"d4c5f9"},{"url":"https://api.github.com/repos/monarch-initiative/dipper/labels/enhancement","name":"enhancement","color":"84b6eb"}],"state":"open","locked":false,"assignee":{"login":"kshefchek","id":1467299,"avatar_url":"https://avatars.githubusercontent.com/u/1467299?v=3","gravatar_id":"","url":"https://api.github.com/users/kshefchek","html_url":"https://github.com/kshefchek","followers_url":"https://api.github.com/users/kshefchek/followers","following_url":"https://api.github.com/users/kshefchek/following{/other_user}","gists_url":"https://api.github.com/users/kshefchek/gists{/gist_id}","starred_url":"https://api.github.com/users/kshefchek/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kshefchek/subscriptions","organizations_url":"https://api.github.com/users/kshefchek/orgs","repos_url":"https://api.github.com/users/kshefchek/repos","events_url":"https://api.github.com/users/kshefchek/events{/privacy}","received_events_url":"https://api.github.com/users/kshefchek/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/monarch-initiative/dipper/milestones/2","html_url":"https://github.com/monarch-initiative/dipper/milestones/Flip%20switch%20from%20Disco-%3EDipper","labels_url":"https://api.github.com/repos/monarch-initiative/dipper/milestones/2/labels","id":924463,"number":2,"title":"Flip switch from Disco->Dipper","description":"We will make a complete switchover from the Disco scheduler to Dipper for the sources that drive our current website (http://monarchinitiative.org/sources):\r\nBiogrid, ClinVar, Coriell, CTD, FlyBase, HPO, IMPC, KEGG, MGI, MPD, NCBI (Gene, Pub2Gene), OMIA, OMIM, Orphanet, Panther, Wormbase, ZFIN.\r\nThe switchover will also include running this off of Jenkins.","creator":{"login":"nlwashington","id":5124411,"avatar_url":"https://avatars.githubusercontent.com/u/5124411?v=3","gravatar_id":"","url":"https://api.github.com/users/nlwashington","html_url":"https://github.com/nlwashington","followers_url":"https://api.github.com/users/nlwashington/followers","following_url":"https://api.github.com/users/nlwashington/following{/other_user}","gists_url":"https://api.github.com/users/nlwashington/gists{/gist_id}","starred_url":"https://api.github.com/users/nlwashington/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nlwashington/subscriptions","organizations_url":"https://api.github.com/users/nlwashington/orgs","repos_url":"https://api.github.com/users/nlwashington/repos","events_url":"https://api.github.com/users/nlwashington/events{/privacy}","received_events_url":"https://api.github.com/users/nlwashington/received_events","type":"User","site_admin":false},"open_issues":24,"closed_issues":18,"state":"open","created_at":"2015-01-06T21:03:38Z","updated_at":"2015-06-19T23:33:28Z","due_on":"2015-06-20T07:00:00Z","closed_at":null},"comments":9,"created_at":"2015-01-22T21:05:14Z","updated_at":"2015-06-23T16:18:58Z","closed_at":null,"body":"using the gene-pathway modeling set out in #38, add the associations for genes to pathways here:\r\nhttp://ctdbase.org/reports/CTD_genes_pathways.tsv.gz\r\n\r\nthe nice thing is that CTD have done the hard work of parsing KEGG, so we get those for free here, and allows us to work with pathways as simply bags of genes first, instead of the complicated directed graphs that they actually are (which will be modeled more completely by Reactome)\r\n"},"comment":{"url":"https://api.github.com/repos/monarch-initiative/dipper/issues/comments/114561250","html_url":"https://github.com/monarch-initiative/dipper/issues/39#issuecomment-114561250","issue_url":"https://api.github.com/repos/monarch-initiative/dipper/issues/39","id":114561250,"user":{"login":"nlwashington","id":5124411,"avatar_url":"https://avatars.githubusercontent.com/u/5124411?v=3","gravatar_id":"","url":"https://api.github.com/users/nlwashington","html_url":"https://github.com/nlwashington","followers_url":"https://api.github.com/users/nlwashington/followers","following_url":"https://api.github.com/users/nlwashington/following{/other_user}","gists_url":"https://api.github.com/users/nlwashington/gists{/gist_id}","starred_url":"https://api.github.com/users/nlwashington/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nlwashington/subscriptions","organizations_url":"https://api.github.com/users/nlwashington/orgs","repos_url":"https://api.github.com/users/nlwashington/repos","events_url":"https://api.github.com/users/nlwashington/events{/privacy}","received_events_url":"https://api.github.com/users/nlwashington/received_events","type":"User","site_admin":false},"created_at":"2015-06-23T16:18:58Z","updated_at":"2015-06-23T16:18:58Z","body":"Gene (products) are now added to pathways.  Pathways are subclasses of cellular processes and of 'pathway' PW:0000001.  The gene products that are linked are the anonymous gene products.\r\n![screen shot 2015-06-22 at 5 15 48 pm](https://cloud.githubusercontent.com/assets/5124411/8311058/9474580c-1988-11e5-8916-313036c70609.png)\r\n\r\n"}}