{"action":"created","issue":{"url":"https://api.github.com/repos/ekg/freebayes/issues/155","labels_url":"https://api.github.com/repos/ekg/freebayes/issues/155/labels{/name}","comments_url":"https://api.github.com/repos/ekg/freebayes/issues/155/comments","events_url":"https://api.github.com/repos/ekg/freebayes/issues/155/events","html_url":"https://github.com/ekg/freebayes/issues/155","id":60538234,"number":155,"title":"\"--region\" in v0.9.21 does not work","user":{"login":"lh3","id":480346,"avatar_url":"https://avatars.githubusercontent.com/u/480346?v=3","gravatar_id":"","url":"https://api.github.com/users/lh3","html_url":"https://github.com/lh3","followers_url":"https://api.github.com/users/lh3/followers","following_url":"https://api.github.com/users/lh3/following{/other_user}","gists_url":"https://api.github.com/users/lh3/gists{/gist_id}","starred_url":"https://api.github.com/users/lh3/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lh3/subscriptions","organizations_url":"https://api.github.com/users/lh3/orgs","repos_url":"https://api.github.com/users/lh3/repos","events_url":"https://api.github.com/users/lh3/events{/privacy}","received_events_url":"https://api.github.com/users/lh3/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":15,"created_at":"2015-03-10T17:35:37Z","updated_at":"2015-03-11T23:42:07Z","closed_at":null,"body":"I am calling variants on a chromosome with:\r\n```sh\r\nfreebayes -f ref.fa -r 2 aln.bam\r\n```\r\nAfter a few minutes, the process finished but the output only contains header lines. Freebayes seems to work fine without `-r`. v0.9.20 does not have this problem."},"comment":{"url":"https://api.github.com/repos/ekg/freebayes/issues/comments/78397064","html_url":"https://github.com/ekg/freebayes/issues/155#issuecomment-78397064","issue_url":"https://api.github.com/repos/ekg/freebayes/issues/155","id":78397064,"user":{"login":"ekg","id":145425,"avatar_url":"https://avatars.githubusercontent.com/u/145425?v=3","gravatar_id":"","url":"https://api.github.com/users/ekg","html_url":"https://github.com/ekg","followers_url":"https://api.github.com/users/ekg/followers","following_url":"https://api.github.com/users/ekg/following{/other_user}","gists_url":"https://api.github.com/users/ekg/gists{/gist_id}","starred_url":"https://api.github.com/users/ekg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ekg/subscriptions","organizations_url":"https://api.github.com/users/ekg/orgs","repos_url":"https://api.github.com/users/ekg/repos","events_url":"https://api.github.com/users/ekg/events{/privacy}","received_events_url":"https://api.github.com/users/ekg/received_events","type":"User","site_admin":false},"created_at":"2015-03-11T23:42:07Z","updated_at":"2015-03-11T23:42:07Z","body":"OK, I can reproduce. Thanks again.\n\nOn Wed, Mar 11, 2015 at 11:38 PM, Erik Garrison <erik.garrison@gmail.com>\nwrote:\n\n> Ah! Thanks, the URL was different and doesn't seem to work.\n>\n> On Wed, Mar 11, 2015 at 11:35 PM, Thomas Sibley <notifications@github.com>\n> wrote:\n>\n>> @ekg <https://github.com/ekg> wget -r '\n>> ftp://hengli-data:lh3data@ftp.broadinstitute.org/tmp' will download the\n>> whole directory that @lh3 <https://github.com/lh3> linked to.\n>>\n>> —\n>> Reply to this email directly or view it on GitHub\n>> <https://github.com/ekg/freebayes/issues/155#issuecomment-78396250>.\n>>\n>\n>\n"}}