{"action":"created","issue":{"url":"https://api.github.com/repos/KHP-Informatics/ngseasy/issues/12","labels_url":"https://api.github.com/repos/KHP-Informatics/ngseasy/issues/12/labels{/name}","comments_url":"https://api.github.com/repos/KHP-Informatics/ngseasy/issues/12/comments","events_url":"https://api.github.com/repos/KHP-Informatics/ngseasy/issues/12/events","html_url":"https://github.com/KHP-Informatics/ngseasy/issues/12","id":111635996,"number":12,"title":"varcaller:ensemble:HaplotypeCaller a typo","user":{"login":"olgamelnichuk","id":547240,"avatar_url":"https://avatars.githubusercontent.com/u/547240?v=3","gravatar_id":"","url":"https://api.github.com/users/olgamelnichuk","html_url":"https://github.com/olgamelnichuk","followers_url":"https://api.github.com/users/olgamelnichuk/followers","following_url":"https://api.github.com/users/olgamelnichuk/following{/other_user}","gists_url":"https://api.github.com/users/olgamelnichuk/gists{/gist_id}","starred_url":"https://api.github.com/users/olgamelnichuk/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/olgamelnichuk/subscriptions","organizations_url":"https://api.github.com/users/olgamelnichuk/orgs","repos_url":"https://api.github.com/users/olgamelnichuk/repos","events_url":"https://api.github.com/users/olgamelnichuk/events{/privacy}","received_events_url":"https://api.github.com/users/olgamelnichuk/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":3,"created_at":"2015-10-15T15:00:38Z","updated_at":"2015-10-24T17:42:12Z","closed_at":"2015-10-24T17:41:50Z","body":"Hi Steve, \r\nin file: https://github.com/KHP-Informatics/ngseasy/blob/master/bin/ngseasy_variant_calling\r\nin line: 1138\r\n\".gz\" is forgotten, so it should be\r\ntabix ${SOUTDocker}/vcf/${BAM_PREFIX}.raw.snps.indels.${VARCALLER}.vcf.gz "},"comment":{"url":"https://api.github.com/repos/KHP-Informatics/ngseasy/issues/comments/150836664","html_url":"https://github.com/KHP-Informatics/ngseasy/issues/12#issuecomment-150836664","issue_url":"https://api.github.com/repos/KHP-Informatics/ngseasy/issues/12","id":150836664,"user":{"login":"snewhouse","id":6317143,"avatar_url":"https://avatars.githubusercontent.com/u/6317143?v=3","gravatar_id":"","url":"https://api.github.com/users/snewhouse","html_url":"https://github.com/snewhouse","followers_url":"https://api.github.com/users/snewhouse/followers","following_url":"https://api.github.com/users/snewhouse/following{/other_user}","gists_url":"https://api.github.com/users/snewhouse/gists{/gist_id}","starred_url":"https://api.github.com/users/snewhouse/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/snewhouse/subscriptions","organizations_url":"https://api.github.com/users/snewhouse/orgs","repos_url":"https://api.github.com/users/snewhouse/repos","events_url":"https://api.github.com/users/snewhouse/events{/privacy}","received_events_url":"https://api.github.com/users/snewhouse/received_events","type":"User","site_admin":false},"created_at":"2015-10-24T17:42:12Z","updated_at":"2015-10-24T17:42:12Z","body":"done. for now"}}