{"action":"created","issue":{"url":"https://api.github.com/repos/alyssafrazee/derfinder/issues/9","labels_url":"https://api.github.com/repos/alyssafrazee/derfinder/issues/9/labels{/name}","comments_url":"https://api.github.com/repos/alyssafrazee/derfinder/issues/9/comments","events_url":"https://api.github.com/repos/alyssafrazee/derfinder/issues/9/events","html_url":"https://github.com/alyssafrazee/derfinder/issues/9","id":57703801,"number":9,"title":"package locfdr was removed from CRAN","user":{"login":"brianhigh","id":1417238,"avatar_url":"https://avatars.githubusercontent.com/u/1417238?v=3","gravatar_id":"","url":"https://api.github.com/users/brianhigh","html_url":"https://github.com/brianhigh","followers_url":"https://api.github.com/users/brianhigh/followers","following_url":"https://api.github.com/users/brianhigh/following{/other_user}","gists_url":"https://api.github.com/users/brianhigh/gists{/gist_id}","starred_url":"https://api.github.com/users/brianhigh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/brianhigh/subscriptions","organizations_url":"https://api.github.com/users/brianhigh/orgs","repos_url":"https://api.github.com/users/brianhigh/repos","events_url":"https://api.github.com/users/brianhigh/events{/privacy}","received_events_url":"https://api.github.com/users/brianhigh/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-02-14T19:32:03Z","updated_at":"2015-02-25T15:50:46Z","closed_at":null,"body":"In your [README.md](https://github.com/alyssafrazee/derfinder/blob/master/README.md), you mention `locfdr` in the installation section. Since `locfdr` has been [removed from CRAN](http://cran.r-project.org/web/packages/locfdr/index.html), you might want to use an alternative which is still supported. Some suggestions may be found in this [stackoverflow thread](http://stackoverflow.com/questions/26220379/local-fdr-from-p-values-in-r-3-1-1). The packages `twilight` and `fdrtool` were suggested and some examples were given in that thread. Otherwise a archived package for `locfdr` must be used, as in...\r\n\r\n```{r}\r\nlibrary(devtools)\r\ninstall_url(\"http://cran.r-project.org/src/contrib/Archive/locfdr/locfdr_1.1-7.tar.gz\")\r\n```"},"comment":{"url":"https://api.github.com/repos/alyssafrazee/derfinder/issues/comments/75984679","html_url":"https://github.com/alyssafrazee/derfinder/issues/9#issuecomment-75984679","issue_url":"https://api.github.com/repos/alyssafrazee/derfinder/issues/9","id":75984679,"user":{"login":"lcolladotor","id":2288213,"avatar_url":"https://avatars.githubusercontent.com/u/2288213?v=3","gravatar_id":"","url":"https://api.github.com/users/lcolladotor","html_url":"https://github.com/lcolladotor","followers_url":"https://api.github.com/users/lcolladotor/followers","following_url":"https://api.github.com/users/lcolladotor/following{/other_user}","gists_url":"https://api.github.com/users/lcolladotor/gists{/gist_id}","starred_url":"https://api.github.com/users/lcolladotor/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lcolladotor/subscriptions","organizations_url":"https://api.github.com/users/lcolladotor/orgs","repos_url":"https://api.github.com/users/lcolladotor/repos","events_url":"https://api.github.com/users/lcolladotor/events{/privacy}","received_events_url":"https://api.github.com/users/lcolladotor/received_events","type":"User","site_admin":false},"created_at":"2015-02-25T15:50:46Z","updated_at":"2015-02-25T15:50:46Z","body":"Yes, you need to use an archived version of `locfdr`. As @alyssafrazee has said, this version is no longer maintained. \r\n\r\nI added more detail on the installation instructions with https://github.com/alyssafrazee/derfinder/pull/14"}}