{"action":"created","issue":{"url":"https://api.github.com/repos/biocore/pyqi/issues/266","labels_url":"https://api.github.com/repos/biocore/pyqi/issues/266/labels{/name}","comments_url":"https://api.github.com/repos/biocore/pyqi/issues/266/comments","events_url":"https://api.github.com/repos/biocore/pyqi/issues/266/events","html_url":"https://github.com/biocore/pyqi/issues/266","id":57854303,"number":266,"title":"pyqi error with updated biom","user":{"login":"jrherr","id":2516381,"avatar_url":"https://avatars.githubusercontent.com/u/2516381?v=3","gravatar_id":"","url":"https://api.github.com/users/jrherr","html_url":"https://github.com/jrherr","followers_url":"https://api.github.com/users/jrherr/followers","following_url":"https://api.github.com/users/jrherr/following{/other_user}","gists_url":"https://api.github.com/users/jrherr/gists{/gist_id}","starred_url":"https://api.github.com/users/jrherr/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jrherr/subscriptions","organizations_url":"https://api.github.com/users/jrherr/orgs","repos_url":"https://api.github.com/users/jrherr/repos","events_url":"https://api.github.com/users/jrherr/events{/privacy}","received_events_url":"https://api.github.com/users/jrherr/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":7,"created_at":"2015-02-16T21:41:06Z","updated_at":"2015-02-17T21:43:05Z","closed_at":"2015-02-17T20:45:46Z","body":"I'm using ```biom``` and with the recent update, I'm getting this ```pyqi``` error:\r\n\r\n```\r\nTraceback (most recent call last):\r\nFile \"/Users/josh/anaconda/bin/pyqi\", line 4, in <module>\r\n__import__('pkg_resources').run_script('pyqi==0.3.2', 'pyqi')\r\nFile \"/Users/josh/anaconda/lib/python2.7/site-packages/pkg_resources/__init__.py\", line 696, in run_script\r\nself.require(requires)[0].run_script(script_name, ns)\r\nFile \"/Users/josh/anaconda/lib/python2.7/site-packages/pkg_resources/__init__.py\", line 1606, in run_script\r\nraise ResolutionError(\"No script named %r\" % script_name)\r\npkg_resources.ResolutionError: No script named 'pyqi'\r\n```\r\n\r\nI _**think**_ I have pyqi installed correctly:\r\n```\r\n~  which pyqi\r\n/Users/josh/anaconda/bin/pyqi\r\n```\r\n\r\nand\r\n\r\n```\r\n~  pip install pyqi --upgrade\r\nRequirement already up-to-date: pyqi in ./anaconda/lib/python2.7/site-packages\r\n```\r\n\r\nand also tried to update from yoshiki's version on binstar:\r\n\r\n```\r\n~  binstar show yoshiki/pyqi\r\nUsing binstar api site https://api.binstar.org\r\nName:    pyqi\r\nSummary: pyqi: expose your interface\r\nAccess:  public\r\nPackage Types:  conda\r\nVersions:\r\n   + 0.3.2\r\n\r\n~  conda install --channel https://conda.binstar.org/yoshiki pyqi\r\nFetching package metadata: ......\r\nSolving package specifications: .\r\n# All requested packages already installed.\r\n# packages in environment at /Users/josh/anaconda:\r\n#\r\npyqi                      0.3.2                    py27_0\r\n```\r\n\r\nEven after all those messages I still get the ```biom``` error above?  Any recommendations of how to fix this -- any idea if this is it a ```pyqi``` issue or a ```biom-format``` issue?\r\n\r\nAlso I'm on a Mac OSX Yosemite machine managing packages with Anaconda.  Doesn't seem to be a problem on that end though..."},"comment":{"url":"https://api.github.com/repos/biocore/pyqi/issues/comments/74760356","html_url":"https://github.com/biocore/pyqi/issues/266#issuecomment-74760356","issue_url":"https://api.github.com/repos/biocore/pyqi/issues/266","id":74760356,"user":{"login":"jrherr","id":2516381,"avatar_url":"https://avatars.githubusercontent.com/u/2516381?v=3","gravatar_id":"","url":"https://api.github.com/users/jrherr","html_url":"https://github.com/jrherr","followers_url":"https://api.github.com/users/jrherr/followers","following_url":"https://api.github.com/users/jrherr/following{/other_user}","gists_url":"https://api.github.com/users/jrherr/gists{/gist_id}","starred_url":"https://api.github.com/users/jrherr/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jrherr/subscriptions","organizations_url":"https://api.github.com/users/jrherr/orgs","repos_url":"https://api.github.com/users/jrherr/repos","events_url":"https://api.github.com/users/jrherr/events{/privacy}","received_events_url":"https://api.github.com/users/jrherr/received_events","type":"User","site_admin":false},"created_at":"2015-02-17T21:43:05Z","updated_at":"2015-02-17T21:43:05Z","body":"That's ok -- I can use the biom format tools in the virtual env, so it's ok for now.  Thank you both @ElDeveloper @Jorge-C for your help and hard work!\r\n"}}