Android Studio Build Error : This version of Android Studio is incompatible with the Gradle Plugin used. Try disabling Instant Run
<p>I upgraded Android Studio version from 1.5 to 2.0 today and something has gone wrong.<br>
First I got Gradle version error, so I updated Gradle version from 2.10 to 2.12.</p>

<pre><code># previous
# distributionUrl=https\://services.gradle.org/distributions/gradle-2.10-all.zip
# current
distributionUrl=https\://services.gradle.org/distributions/gradle-2.12-all.zip
</code></pre>

<p>Gradle version error has disappeared.<br>
But now I have this error when I try to run my project:<br></p>

<pre><code>Error running app: This version of Android Studio is incompatible with the Gradle Plugin used. Try disabling Instant Run (or updating either the IDE or the Gradle plugin to the latest version)
</code></pre>

<p><br>
This is my Project Gradle.build:</p>

<pre><code>// Top-level build file where you can add configuration options common to all sub-projects/modules.

buildscript {
    repositories {
        jcenter()
    }
    dependencies {
        classpath 'com.android.tools.build:gradle:2.0.0'
        classpath 'com.google.gms:google-services:2.1.0-alpha1'
        classpath 'com.neenbedankt.gradle.plugins:android-apt:1.8'

        // NOTE: Do not place your application dependencies here; they belong
        // in the individual module build.gradle files
    }
}

allprojects {
    repositories {
        jcenter()
    }
}

task clean(type: Delete) {
    delete rootProject.buildDir
}
</code></pre>

<p><br>
And this is my module:app Gradle.build file.<br></p>

<pre><code>apply plugin: 'com.android.application'
apply plugin: 'io.fabric'
apply plugin: 'android-apt'

android {
    compileSdkVersion 23
    buildToolsVersion "23.0.2"

    defaultConfig {
        applicationId "com.example.test"
        minSdkVersion 19
        targetSdkVersion 23
        versionCode 1
        versionName "1.0"

        multiDexEnabled true
    }
    buildTypes {
        release {
            minifyEnabled false
            proguardFiles getDefaultProguardFile('proguard-android.txt'), 'proguard-rules.pro'
        }
    }
    compileOptions {
        sourceCompatibility JavaVersion.VERSION_1_7
        targetCompatibility JavaVersion.VERSION_1_7
    }
    dexOptions {
        maxProcessCount = 4 // this is the default value
        javaMaxHeapSize "4g"
        preDexLibraries = false
    }
}

buildscript {
    repositories {
        maven { url 'https://maven.fabric.io/public' }
        mavenCentral()
    }

    dependencies {
        classpath 'io.fabric.tools:gradle:1.+'
    }
}

repositories {
    jcenter()
    maven { url 'https://maven.fabric.io/public' }
    mavenCentral()
}


dependencies {
    compile fileTree(dir: 'libs', include: ['*.jar'])
    testCompile 'junit:junit:4.12'

    compile('com.crashlytics.sdk.android:crashlytics:2.5.5@aar') { transitive = true; }
    compile('com.twitter.sdk.android:twitter:1.12.1@aar') { transitive = true; }

    apt 'com.github.hotchemi:permissionsdispatcher-processor:2.1.2'
    compile 'com.android.support:appcompat-v7:23.3.0'
    compile 'com.android.support:design:23.3.0'
    compile 'com.android.support:cardview-v7:23.3.0'
    compile 'com.android.support:palette-v7:23.3.0'
    compile 'com.android.support:recyclerview-v7:23.3.0'
    compile 'com.android.support:support-v13:23.3.0'
    compile 'com.android.support:support-v4:23.3.0'
    compile 'com.android.support:multidex:1.0.0'
    compile 'com.google.android.gms:play-services-analytics:8.4.0'
    compile 'com.google.android.gms:play-services-gcm:8.4.0'
    compile 'com.google.android.gms:play-services-maps:8.4.0'
    compile 'com.google.android.gms:play-services-location:8.4.0'
    compile 'com.squareup.retrofit2:retrofit:2.0.0-beta4'
    compile 'com.squareup.retrofit2:converter-gson:2.0.0-beta4'
    compile 'com.facebook.android:facebook-android-sdk:4.6.0'
    compile 'com.paypal.sdk:paypal-android-sdk:2.13.3'
    compile 'com.squareup.picasso:picasso:2.5.2'
    compile 'com.github.hotchemi:permissionsdispatcher:2.1.2'
}

apply plugin: 'com.google.gms.google-services'
</code></pre>

<p><br>
I disabled Instant Run from Preferences but nothing changed.<br>
How can I resolve this error?<br>
I'm struggling for half days.</p>