Synthetic Augmentation with Large-scale Unconditional Pre-training
Jiarong Ye Haomiao Ni Peng Jin Sharon X. Huang Yuan Xue
Deep learning based medical image recognition systems often require a
substantial amount of training data with expert annotations, which can be
expensive and time-consuming to obtain. Recently, synthetic augmentation
techniques have been proposed to mitigate the issue by generating realistic
images conditioned on class labels. However, the effectiveness of these methods
heavily depends on the representation capability of the trained generative
model, which cannot be guaranteed without sufficient labeled training data. To
further reduce the dependency on annotated data, we propose a synthetic
augmentation method called HistoDiffusion, which can be pre-trained on
large-scale unlabeled datasets and later applied to a small-scale labeled
dataset for augmented training. In particular, we train a latent diffusion
model (LDM) on diverse unlabeled datasets to learn common features and generate
realistic images without conditional inputs. Then, we fine-tune the model with
classifier guidance in latent space on an unseen labeled dataset so that the
model can synthesize images of specific categories. Additionally, we adopt a
selective mechanism to only add synthetic samples with high confidence of
matching to target labels. We evaluate our proposed method by pre-training on
three histopathology datasets and testing on a histopathology dataset of
colorectal cancer (CRC) excluded from the pre-training datasets. With
HistoDiffusion augmentation, the classification accuracy of a backbone
classifier is remarkably improved by 6.4% using a small set of the original
labels. Our code is available at https://github.com/karenyyy/HistoDiffAug.