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popV
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tabula_muris_Limb_muscle_10x

Joblib
popV
biology
genomics
single-cell
anndata_version:0.11.3
python_version:3.11.12
tissue: limb muscle
Model card Files Community
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  1. .gitattributes +1 -0
  2. OnClass.data-00000-of-00001 +3 -0
  3. OnClass.index +0 -0
  4. OnClass.meta +0 -0
  5. OnClass.npz +3 -0
  6. accuracies.json +4 -0
  7. celltypist.pkl +3 -0
  8. checkpoint +2 -0
  9. harmony_knn_classifier.joblib +3 -0
  10. obo_dag.joblib +3 -0
  11. popv_output/predictions.csv +0 -0
  12. preprocessing.json +0 -0
  13. pynndescent_index.joblib +3 -0
  14. scanvi/model.pt +3 -0
  15. scvi/model.pt +3 -0
  16. scvi_knn_classifier.joblib +3 -0
  17. svm_classifier_cuml.joblib +3 -0
  18. xgboost_classifier.model +3 -0
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OnClass.index ADDED
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OnClass.meta ADDED
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+ "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| mesenchymal stem cell | 1319 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| endothelial cell | 669 | 1.00 | 0.99 | 0.99 | 1.00 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| macrophage | 246 | 0.98 | 0.99 | 1.00 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 0.99 |\n| skeletal muscle satellite cell | 185 | 1.00 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| B cell | 171 | 0.99 | 1.00 | 1.00 | 1.00 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| T cell | 118 | 0.98 | 0.99 | 1.00 | 1.00 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| smooth muscle cell | 144 | 0.99 | 0.99 | 0.98 | 1.00 | 0.00 | 0.96 | 0.99 | 0.98 | 0.99 |\n| Schwann cell | 16 | 0.97 | 0.97 | 0.97 | 1.00 | 0.00 | 0.50 | 0.97 | 0.97 | 0.97 |\n| cell of skeletal muscle | 19 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |",
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+ "ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| mesenchymal stem cell | 11718 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| endothelial cell | 6225 | 1.00 | 0.99 | 1.00 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 1.00 |\n| macrophage | 2239 | 0.99 | 0.99 | 0.99 | 1.00 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| skeletal muscle satellite cell | 1870 | 0.99 | 0.99 | 1.00 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| B cell | 1340 | 0.99 | 1.00 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| T cell | 1136 | 0.99 | 0.99 | 1.00 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| smooth muscle cell | 1021 | 0.98 | 0.99 | 0.99 | 0.98 | 0.00 | 0.96 | 0.99 | 0.97 | 0.99 |\n| Schwann cell | 258 | 0.95 | 0.96 | 0.96 | 0.96 | 0.00 | 0.64 | 0.96 | 0.97 | 0.96 |\n| cell of skeletal muscle | 173 | 0.99 | 1.00 | 1.00 | 0.97 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |"
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