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README.md

@@ -6,7 +6,7 @@ tags:
 - genomics
 - single-cell
 - anndata_version:0.11.3
-- python_version:3.11.11
+- python_version:3.11.12
 - popV
 - 'tissue: limb muscle'
 ---
@@ -32,29 +32,29 @@ computed on a 10% random subset of the data that was not used for training.
 
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| mesenchymal stem cell | 1319 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
-| endothelial cell | 669 | 1.00 | 0.99 | 0.99 | 1.00 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
-| macrophage | 246 | 0.98 | 0.99 | 1.00 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 0.99 |
-| skeletal muscle satellite cell | 185 | 1.00 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
-| B cell | 171 | 0.99 | 1.00 | 1.00 | 1.00 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |
-| T cell | 118 | 0.98 | 0.99 | 1.00 | 1.00 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
-| smooth muscle cell | 144 | 0.99 | 0.99 | 0.98 | 1.00 | 0.00 | 0.96 | 0.99 | 0.98 | 0.99 |
-| Schwann cell | 16 | 0.97 | 0.97 | 0.97 | 1.00 | 0.00 | 0.50 | 0.97 | 0.97 | 0.97 |
-| cell of skeletal muscle | 19 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
+| mesenchymal stem cell | 1317 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
+| endothelial cell | 682 | 1.00 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
+| macrophage | 255 | 0.99 | 0.99 | 1.00 | 0.99 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |
+| skeletal muscle satellite cell | 178 | 1.00 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 1.00 |
+| B cell | 167 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 0.99 | 1.00 |
+| T cell | 111 | 0.99 | 0.99 | 0.99 | 1.00 | 0.00 | 1.00 | 1.00 | 0.99 | 1.00 |
+| smooth muscle cell | 141 | 0.99 | 0.99 | 0.99 | 0.98 | 0.00 | 0.95 | 0.99 | 0.98 | 0.99 |
+| Schwann cell | 19 | 0.95 | 0.95 | 0.95 | 0.97 | 0.00 | 0.90 | 0.95 | 0.95 | 0.95 |
+| cell of skeletal muscle | 17 | 0.97 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
 
 The train accuracies are computed on the training data.
 
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| mesenchymal stem cell | 11718 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
-| endothelial cell | 6225 | 1.00 | 0.99 | 1.00 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 1.00 |
-| macrophage | 2239 | 0.99 | 0.99 | 0.99 | 1.00 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
-| skeletal muscle satellite cell | 1870 | 0.99 | 0.99 | 1.00 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
-| B cell | 1340 | 0.99 | 1.00 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |
-| T cell | 1136 | 0.99 | 0.99 | 1.00 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
-| smooth muscle cell | 1021 | 0.98 | 0.99 | 0.99 | 0.98 | 0.00 | 0.96 | 0.99 | 0.97 | 0.99 |
-| Schwann cell | 258 | 0.95 | 0.96 | 0.96 | 0.96 | 0.00 | 0.64 | 0.96 | 0.97 | 0.96 |
-| cell of skeletal muscle | 173 | 0.99 | 1.00 | 1.00 | 0.97 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
+| mesenchymal stem cell | 11720 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
+| endothelial cell | 6212 | 1.00 | 0.99 | 1.00 | 1.00 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
+| macrophage | 2230 | 0.99 | 0.99 | 0.99 | 1.00 | 0.00 | 0.98 | 1.00 | 0.99 | 1.00 |
+| skeletal muscle satellite cell | 1877 | 0.99 | 0.99 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 0.99 | 1.00 |
+| B cell | 1344 | 0.99 | 1.00 | 0.99 | 1.00 | 0.00 | 0.99 | 0.99 | 0.99 | 1.00 |
+| T cell | 1143 | 0.99 | 1.00 | 1.00 | 0.99 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
+| smooth muscle cell | 1024 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.96 | 0.98 | 0.97 | 0.99 |
+| Schwann cell | 255 | 0.95 | 0.96 | 0.96 | 0.98 | 0.00 | 0.94 | 0.98 | 0.99 | 0.98 |
+| cell of skeletal muscle | 175 | 0.99 | 1.00 | 1.00 | 0.99 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
 
 </details>