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scvi-tools
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tabula-sapiens-blood-scvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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@@ -51,7 +51,7 @@ space might still be useful for analysis.
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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- | Mean Absolute Error | 1.21 | 1.32 |
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  | Pearson Correlation | 0.99 | 0.99 |
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  | Spearman Correlation | 0.96 | 0.96 |
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  | R² (R-Squared) | 0.98 | 0.98 |
@@ -63,10 +63,10 @@ preserved by the generated model expression. This value is usually quite high.
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  | Metric | Training Value |
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  |-------------------------|----------------|
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- | Mean Absolute Error | 24.44 |
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- | Pearson Correlation | 0.72 |
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- | Spearman Correlation | 0.76 |
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- | R² (R-Squared) | -0.82 |
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  </details>
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@@ -83,24 +83,24 @@ cell-type.
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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- | erythrocyte | 0.96 | 1.19 | 0.66 | 0.85 | 0.09 | 0.97 | 10061.00 |
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- | neutrophil | 0.97 | 1.18 | 0.70 | 0.93 | 0.22 | 0.90 | 8432.00 |
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- | classical monocyte | 0.92 | 0.57 | 0.72 | 0.97 | 0.62 | 0.95 | 7211.00 |
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- | mature NK T cell | 0.96 | 1.29 | 0.66 | 0.91 | 0.62 | 0.93 | 2332.00 |
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- | naive B cell | 0.97 | 1.82 | 0.60 | 0.86 | 0.47 | 0.87 | 1526.00 |
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- | CD8-positive, alpha-beta cytokine secreting effector T cell | 0.94 | 1.56 | 0.63 | 0.87 | 0.64 | 0.93 | 1493.00 |
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- | CD4-positive, alpha-beta memory T cell | 0.96 | 1.56 | 0.59 | 0.86 | 0.58 | 0.88 | 949.00 |
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- | memory B cell | 0.97 | 2.04 | 0.63 | 0.85 | 0.54 | 0.88 | 597.00 |
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- | type I NK T cell | 0.91 | 2.39 | 0.60 | 0.79 | 0.62 | 0.89 | 518.00 |
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- | plasma cell | 0.78 | 1.34 | 0.74 | 0.94 | 0.61 | 0.94 | 487.00 |
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- | naive thymus-derived CD4-positive, alpha-beta T cell | 0.94 | 2.48 | 0.64 | 0.80 | 0.46 | 0.82 | 412.00 |
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- | CD8-positive, alpha-beta T cell | 0.96 | 2.08 | 0.66 | 0.83 | 0.57 | 0.87 | 376.00 |
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- | platelet | 0.75 | 2.77 | 0.69 | 0.81 | 0.41 | 0.83 | 239.00 |
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- | hematopoietic stem cell | 0.92 | 2.83 | 0.65 | 0.78 | 0.65 | 0.90 | 47.00 |
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- | T cell | 0.96 | 3.91 | 0.61 | 0.51 | 0.55 | 0.77 | 31.00 |
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- | basophil | 0.87 | 3.18 | 0.67 | 0.78 | 0.61 | 0.88 | 29.00 |
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- | CD141-positive myeloid dendritic cell | 0.90 | 4.53 | 0.62 | 0.62 | 0.48 | 0.75 | 15.00 |
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- | plasmacytoid dendritic cell | 0.85 | 5.07 | 0.57 | 0.51 | 0.47 | 0.72 | 11.00 |
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  </details>
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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+ | Mean Absolute Error | 1.20 | 1.32 |
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  | Pearson Correlation | 0.99 | 0.99 |
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  | Spearman Correlation | 0.96 | 0.96 |
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  | R² (R-Squared) | 0.98 | 0.98 |
 
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  | Metric | Training Value |
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  |-------------------------|----------------|
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+ | Mean Absolute Error | 24.12 |
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+ | Pearson Correlation | 0.73 |
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+ | Spearman Correlation | 0.77 |
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+ | R² (R-Squared) | -0.74 |
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  </details>
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | erythrocyte | 0.96 | 1.13 | 0.68 | 0.86 | 0.09 | 0.98 | 10061.00 |
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+ | neutrophil | 0.97 | 1.12 | 0.71 | 0.93 | 0.22 | 0.90 | 8432.00 |
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+ | classical monocyte | 0.92 | 0.54 | 0.74 | 0.97 | 0.62 | 0.95 | 7211.00 |
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+ | mature NK T cell | 0.96 | 1.35 | 0.64 | 0.92 | 0.62 | 0.93 | 2332.00 |
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+ | naive B cell | 0.97 | 1.74 | 0.62 | 0.86 | 0.47 | 0.87 | 1526.00 |
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+ | CD8-positive, alpha-beta cytokine secreting effector T cell | 0.94 | 1.51 | 0.65 | 0.87 | 0.64 | 0.93 | 1493.00 |
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+ | CD4-positive, alpha-beta memory T cell | 0.95 | 1.57 | 0.59 | 0.86 | 0.58 | 0.88 | 949.00 |
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+ | memory B cell | 0.98 | 2.14 | 0.61 | 0.84 | 0.54 | 0.88 | 597.00 |
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+ | type I NK T cell | 0.92 | 2.37 | 0.60 | 0.79 | 0.62 | 0.89 | 518.00 |
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+ | plasma cell | 0.81 | 1.29 | 0.74 | 0.94 | 0.61 | 0.94 | 487.00 |
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+ | naive thymus-derived CD4-positive, alpha-beta T cell | 0.94 | 2.49 | 0.63 | 0.80 | 0.46 | 0.82 | 412.00 |
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+ | CD8-positive, alpha-beta T cell | 0.95 | 2.20 | 0.63 | 0.81 | 0.57 | 0.87 | 376.00 |
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+ | platelet | 0.76 | 2.71 | 0.70 | 0.82 | 0.40 | 0.83 | 239.00 |
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+ | hematopoietic stem cell | 0.93 | 2.90 | 0.64 | 0.77 | 0.65 | 0.90 | 47.00 |
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+ | T cell | 0.93 | 3.83 | 0.62 | 0.51 | 0.54 | 0.77 | 31.00 |
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+ | basophil | 0.86 | 2.97 | 0.69 | 0.78 | 0.61 | 0.88 | 29.00 |
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+ | CD141-positive myeloid dendritic cell | 0.88 | 4.58 | 0.61 | 0.62 | 0.49 | 0.75 | 15.00 |
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+ | plasmacytoid dendritic cell | 0.90 | 4.96 | 0.58 | 0.52 | 0.47 | 0.72 | 11.00 |
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  </details>
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