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Runtime error

jennzhuge commited on Jun 12, 2024

Commit

675706f

1 Parent(s): 8465e44

fixed error with perplexity in 2nd tsne

Files changed (2) hide show

__pycache__/app.cpython-39.pyc CHANGED Viewed

Binary files a/__pycache__/app.cpython-39.pyc and b/__pycache__/app.cpython-39.pyc differ

app.py CHANGED Viewed

@@ -221,7 +221,7 @@ def cluster_dna2(k: float, method: str, dna_sequence: str, latitude: str, longit
     top_genuses = top_genuses.head(k).index
     df = df[df["genus"].isin(top_genuses)]
     tsne = TSNE(
-        n_components=2, perplexity=30, learning_rate=200,
         n_iter=1000, random_state=0,
     )
     X = np.vstack([df['embeddings'].tolist(), embed])

     top_genuses = top_genuses.head(k).index
     df = df[df["genus"].isin(top_genuses)]
     tsne = TSNE(
+        n_components=2, perplexity=5, learning_rate=200,
         n_iter=1000, random_state=0,
     )
     X = np.vstack([df['embeddings'].tolist(), embed])