Mbi2Spi / configs /confocal.cfg
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MODEL:
IMG_SIZE: 1024
CROP_SIZE: 320
CONFOCAL_IN: 3 # 3-channel microscope file
CONFOCAL_OUT: 1 # nuclei
IMC_IN: 4 # 3-channel microscope file + 1 channel confocal
IMC_OUT: 1 # nuclei
GRAD_CKPT: True
TIMM_MODEL: none
NORM: INSTANCE
CONFOCAL_PATH: none
IMC_PATH: none
TRAIN:
LR_G: 0.0002
LR_D: 0.0002
DECAY: 0.0
BETA1: 0.5
EARLY_STAGE: 0
BURN_IN: 0
BURN: 500
RAMPUP: 1000
EPOCHS: 1000
BATCHSIZE: 16
CROP_SAMPLE_NUM: 16
RATIO: 0.2
SEED: 42
PERTURB_PROB: 0.1
IMC_RATIO: 100.0
CON_RATIO: 100.0
SIM_RATIO: 50.0
EDGE_RATIO: 100.0
ADV_RATIO: 1.0
CLR_RATIO: 0.0
FREQ_RATIO: 0.00001
TEST:
BATCHSIZE: 32