Update SAFE calculations after performing multiple hypothesis testing

data/max_safe_scores.csv

@@ -1,157 +1,157 @@
 Score	Label
-57.24212412906589	muscle cell
-32.88575579618646	gut endothelial cell
-68.33276302825465	vascular associated smooth muscle cell
-65.60218506508453	transit amplifying cell of large intestine
-60.57328738281343	paneth cell of epithelium of large intestine
-53.55434373383748	respiratory mucous cell
-67.51263497190467	serous cell of epithelium of trachea
-70.59531977891938	epithelial cell of uterus
-54.54497568285532	adventitial cell
-44.48120418159135	type i pneumocyte
-66.8200370049968	keratinocyte
-53.213074316582514	naive regulatory t cell
-70.08625005916589	hillock-club cell of prostate epithelium
-40.97493882470525	ciliated cell
-61.94846689634762	pancreatic pp cell
-62.21268922030709	liver dendritic cell
-58.842661091087365	erythroid progenitor
-47.707459799310165	cd8-positive, alpha-beta cytotoxic t cell
-50.04651668394963	salivary gland cell
-63.33412974195806	ciliated epithelial cell
-49.9825702999617	small intestine goblet cell
-53.31444331486421	myofibroblast cell
-33.357008409459624	mature enterocyte
-53.86157212957769	pancreatic beta cell
-60.55958610513604	artery endothelial cell
-68.33276302825465	bladder urothelial cell
-64.2564859271062	transit amplifying cell of small intestine
-47.16865785869457	cell of skeletal muscle
-52.58358995627732	ciliary body
-49.28325852154918	myeloid dendritic cell
-52.02212057284234	retinal blood vessel endothelial cell
-45.882169501140645	fibroblast of cardiac tissue
-45.17058718147967	duct epithelial cell
-51.52398061055586	retinal pigment epithelial cell
-58.431127463674216	intrahepatic cholangiocyte
-72.49538816494459	t follicular helper cell
-54.87306382193252	bronchial smooth muscle cell
-50.74094206783047	microglial cell
-52.85720194959282	epithelial cell
-66.14334595978865	tracheal goblet cell
-56.40588329263958	myometrial cell
-49.24455035820929	eye photoreceptor cell
-49.28325852154918	naive thymus-derived cd4-positive, alpha-beta t cell
-65.48855674766203	kidney epithelial cell
-61.73120506666187	connective tissue cell
-39.22779888896024	cd4-positive helper t cell
-56.43391910834234	corneal keratocyte
-36.96416340380268	nk cell
-58.92966183548617	epithelial cell of lacrimal sac
-58.17105108598181	schwann cell
-71.02764771890392	intermediate monocyte
-59.40232865075343	immature enterocyte
-63.34981397829227	non-classical monocyte
-44.69517258395304	smooth muscle cell
-49.648711534022425	vein endothelial cell
-54.54497568285532	intestinal tuft cell
-55.57416537817312	lacrimal gland functional unit cell
-47.640497356454944	hepatocyte
-57.256393553095975	plasma cell
-45.8314550265726	classical monocyte
-51.776777197323696	luminal epithelial cell of mammary gland
-48.86193650322158	intestinal enteroendocrine cell
-66.47885811682684	endothelial cell of vascular tree
-68.01690630151217	retinal bipolar neuron
-70.59531977891938	adipocyte
-50.65646368566376	ocular surface cell
-55.6794467624372	fast muscle cell
-65.60218506508453	immature natural killer cell
-72.34999380233272	cd4-positive, alpha-beta memory t cell
-56.51955213083469	club cell of prostate epithelium
-58.17949173178366	mesothelial cell
-55.06009497029637	pancreatic acinar cell
-72.19211124078876	intestinal crypt stem cell
-61.098860402542805	basal cell
-52.09969964593526	duodenum glandular cell
-43.7783031074089	alveolar fibroblast
-50.71919476657701	corneal epithelial cell
-60.79986963413237	granulocyte
-66.55025270839613	pancreatic alpha cell
-49.05040717059283	pulmonary ionocyte
-55.75320101787558	secretory cell
-74.17624402461487	cd141-positive myeloid dendritic cell
-59.54936790445137	large intestine goblet cell
-63.64196222376801	myeloid cell
-53.86157212957769	myeloid progenitor
-41.16854231277559	type ii pneumocyte
-62.444112558934286	ionocyte
-44.71293357956197	immune cell
-35.44553801382083	hematopoietic stem cell
-29.94575720844596	capillary endothelial cell
-61.94846689634762	langerhans cell
-41.57900482985377	monocyte
-62.764321960233474	skeletal muscle satellite stem cell
-67.51263497190467	enterocyte of epithelium of large intestine
-68.24570020913401	dn1 thymic pro-t cell
-65.60218506508453	mesenchymal stem cell
-66.47885811682684	cd1c-positive myeloid dendritic cell
-57.63114533692614	serous cell of epithelium of bronchus
-41.10897485645823	muller cell
-82.46813634838138	b cell
-46.170958497553904	goblet cell
-69.06032600710903	melanocyte
-58.11393517530226	retinal ganglion cell
-46.82331773662829	basal cell of prostate epithelium
-68.05940163427098	endothelial cell
-38.32040066507459	enterocyte of epithelium of small intestine
-62.22118567419768	cd8-positive, alpha-beta cytokine secreting effector t cell
-71.01554781940325	dn4 thymocyte
-64.2861333333399	conjunctival epithelial cell
-58.39272308163984	nampt neutrophil
-52.18261872190151	lung ciliated cell
-37.782777619448936	fibroblast
-49.38855426858982	hillock cell of prostate epithelium
-38.59164335942763	retina horizontal cell
-60.13434411995781	dendritic cell
-30.48475149633657	bronchial vessel endothelial cell
-57.57080609459548	medullary thymic epithelial cell
-49.55098428833077	pancreatic stellate cell
-55.93374661835752	dn3 thymocyte
-42.88366758319536	endothelial cell of hepatic sinusoid
-44.10434674162206	limbal stromal cell
-55.3966143043584	endothelial cell of lymphatic vessel
-61.028896968375854	plasmablast
-51.013709907572526	lung microvascular endothelial cell
-58.363593917343614	regulatory t cell
-65.64257463835301	lymphatic endothelial cell
-50.51713186768671	intestinal crypt stem cell of small intestine
-71.94349215563571	pancreatic ductal cell
-72.3331946224497	cardiac muscle cell
-55.659023376513005	paneth cell of epithelium of small intestine
-68.6185377677344	double-positive, alpha-beta thymocyte
-65.16892189512642	mature conventional dendritic cell
-58.431127463674216	pancreatic delta cell
-83.90306383514704	memory b cell
-62.22118567419768	mature nk t cell
+58.22830195137129	muscle cell
+24.924209061686646	gut endothelial cell
+56.86006088249269	vascular associated smooth muscle cell
+67.52022609641601	transit amplifying cell of large intestine
+63.46667686225725	paneth cell of epithelium of large intestine
+47.75734615269212	respiratory mucous cell
+65.64071809245605	serous cell of epithelium of trachea
+62.77773535111961	epithelial cell of uterus
+58.46674999131604	adventitial cell
+53.45242777795964	type i pneumocyte
+66.72583599476093	keratinocyte
+56.711905562760734	naive regulatory t cell
+68.75630094290007	hillock-club cell of prostate epithelium
+43.665059959002	ciliated cell
+51.97202465390437	pancreatic pp cell
+65.93113599345739	liver dendritic cell
+71.88402205835969	erythroid progenitor
+46.89229851305221	cd8-positive, alpha-beta cytotoxic t cell
+53.23506832356958	salivary gland cell
+68.7476036498634	ciliated epithelial cell
+49.63525798570659	small intestine goblet cell
+53.9573132733569	myofibroblast cell
+29.74209806937281	mature enterocyte
+42.68319361228681	pancreatic beta cell
+61.01519569069846	artery endothelial cell
+66.14334595978865	bladder urothelial cell
+65.64257463835301	transit amplifying cell of small intestine
+39.08385036676093	cell of skeletal muscle
+54.530282467959225	ciliary body
+54.02680546104516	myeloid dendritic cell
+52.12789862049554	retinal blood vessel endothelial cell
+41.38564296727933	fibroblast of cardiac tissue
+59.27676966513299	duct epithelial cell
+58.01394496295613	retinal pigment epithelial cell
+65.64257463835301	intrahepatic cholangiocyte
+73.02631436418339	t follicular helper cell
+53.83416092299011	bronchial smooth muscle cell
+51.97866169869326	microglial cell
+61.94846689634762	epithelial cell
+65.82913006402482	tracheal goblet cell
+44.717196506015895	myometrial cell
+43.28295025447329	eye photoreceptor cell
+51.52450430590647	naive thymus-derived cd4-positive, alpha-beta t cell
+62.78304115858365	kidney epithelial cell
+53.41152976852174	connective tissue cell
+40.932050456902815	cd4-positive helper t cell
+44.132106748959	corneal keratocyte
+41.264450951405074	nk cell
+65.16892189512642	epithelial cell of lacrimal sac
+54.88421986544756	schwann cell
+68.07112524550766	intermediate monocyte
+61.424162600515984	immature enterocyte
+65.3579350588772	non-classical monocyte
+44.89658636528388	smooth muscle cell
+53.44134226327922	vein endothelial cell
+55.6794467624372	intestinal tuft cell
+43.689746775126935	lacrimal gland functional unit cell
+53.8454835833468	hepatocyte
+45.660279682598464	plasma cell
+48.62539244886317	classical monocyte
+49.14650894982977	luminal epithelial cell of mammary gland
+45.64089042632577	intestinal enteroendocrine cell
+70.59531977891938	endothelial cell of vascular tree
+65.4205926915418	retinal bipolar neuron
+72.34999380233272	adipocyte
+44.74155420181227	ocular surface cell
+54.24954922565641	fast muscle cell
+63.453611407302354	immature natural killer cell
+72.75055795483091	cd4-positive, alpha-beta memory t cell
+58.96249445858075	club cell of prostate epithelium
+57.6585612520952	mesothelial cell
+60.46417628857796	pancreatic acinar cell
+75.81088812835182	intestinal crypt stem cell
+68.01690630151217	basal cell
+56.11582824110239	duodenum glandular cell
+40.97493882470525	alveolar fibroblast
+62.5716296706321	corneal epithelial cell
+67.12695312950223	granulocyte
+69.38579098870387	pancreatic alpha cell
+43.28295025447329	pulmonary ionocyte
+66.14334595978865	secretory cell
+79.41929591684541	cd141-positive myeloid dendritic cell
+54.54497568285532	large intestine goblet cell
+56.43391910834234	myeloid cell
+67.75161184414966	myeloid progenitor
+46.78706084460593	type ii pneumocyte
+67.48635907709627	ionocyte
+36.65590152738161	immune cell
+21.46345235087236	hematopoietic stem cell
+30.93874277006964	capillary endothelial cell
+61.679318564841786	langerhans cell
+45.19727620642443	monocyte
+71.87060388574949	skeletal muscle satellite stem cell
+48.63839771231695	enterocyte of epithelium of large intestine
+68.07112524550766	dn1 thymic pro-t cell
+63.86156142315978	mesenchymal stem cell
+72.3331946224497	cd1c-positive myeloid dendritic cell
+62.45760327399214	serous cell of epithelium of bronchus
+42.98726608809216	muller cell
+65.44229564927751	b cell
+40.9025309798492	goblet cell
+70.45762999738781	melanocyte
+56.11582824110239	retinal ganglion cell
+53.9762514931592	basal cell of prostate epithelium
+64.88736868893122	endothelial cell
+35.06309652531322	enterocyte of epithelium of small intestine
+60.89236492921116	cd8-positive, alpha-beta cytokine secreting effector t cell
+69.7808125710218	dn4 thymocyte
+72.34999380233272	conjunctival epithelial cell
+38.90945103322988	nampt neutrophil
+49.64121911921327	lung ciliated cell
+43.932860842816986	fibroblast
+52.605841751531685	hillock cell of prostate epithelium
+36.39982693302432	retina horizontal cell
+56.711905562760734	dendritic cell
+36.985368450235846	bronchial vessel endothelial cell
+58.92966183548617	medullary thymic epithelial cell
+67.12695312950223	pancreatic stellate cell
+53.86157212957769	dn3 thymocyte
+55.97893744929589	endothelial cell of hepatic sinusoid
+54.51773626637066	limbal stromal cell
+57.24212412906589	endothelial cell of lymphatic vessel
+63.20985052908532	plasmablast
+44.10434674162206	lung microvascular endothelial cell
+69.63254543937533	regulatory t cell
+65.3579350588772	lymphatic endothelial cell
+53.9762514931592	intestinal crypt stem cell of small intestine
+65.3442337811998	pancreatic ductal cell
+62.7053877577029	cardiac muscle cell
+57.408337716087495	paneth cell of epithelium of small intestine
+62.95611263505548	double-positive, alpha-beta thymocyte
+63.50022318523373	mature conventional dendritic cell
+75.81088812835182	pancreatic delta cell
+80.59215820577089	memory b cell
+68.6185377677344	mature nk t cell
 74.75074252447105	stromal cell
-50.94193703900543	luminal cell of prostate epithelium
-74.86877827327373	radial glial cell
-47.91500904131653	respiratory goblet cell
-73.06575362848626	sperm
-75.37311300933561	type i nk t cell
-62.27117325268886	endothelial cell of artery
-67.91834484736788	pericyte cell
-54.36114006885887	tendon cell
-60.34909741738217	limbal stem cell
-58.842661091087365	club cell
-62.45760327399214	fibroblast of breast
-60.12724866776581	macrophage
-62.45760327399214	mucus secreting cell
-42.394715046091605	tongue muscle cell
-47.89918597939746	acinar cell of salivary gland
-53.28637281298965	cardiac endothelial cell
-61.23654204391594	myoepithelial cell
-24.47794802177718	intestinal crypt stem cell of large intestine
-40.30241163275304	cd24 neutrophil
-52.19083553311167	plasmacytoid dendritic cell
+69.74712207965804	luminal cell of prostate epithelium
+78.8454991493836	radial glial cell
+46.83784694407216	respiratory goblet cell
+71.03890912002329	sperm
+74.68226489333665	type i nk t cell
+52.47493300015665	endothelial cell of artery
+61.75502343647598	pericyte cell
+44.63403935712071	tendon cell
+61.41364564291823	limbal stem cell
+58.96249445858075	club cell
+65.82913006402482	fibroblast of breast
+55.93374661835752	macrophage
+63.72667000603314	mucus secreting cell
+46.77438573933775	tongue muscle cell
+44.70380354475207	acinar cell of salivary gland
+56.28361915524988	cardiac endothelial cell
+57.43676984077211	myoepithelial cell
+24.912043729695103	intestinal crypt stem cell of large intestine
+34.57904426264556	cd24 neutrophil
+48.47503535221177	plasmacytoid dendritic cell

data/mean_safe_scores.csv

@@ -1,157 +1,157 @@
 Score	Label
-47.549663453394196	muscle cell
-20.090492407102357	gut endothelial cell
-60.75309903301511	vascular associated smooth muscle cell
-55.161572548547184	transit amplifying cell of large intestine
-51.469777643325614	paneth cell of epithelium of large intestine
-41.3743528228787	respiratory mucous cell
-56.513430031111824	serous cell of epithelium of trachea
-56.05959215211959	epithelial cell of uterus
-38.67972198610061	adventitial cell
-40.019580279999644	type i pneumocyte
-54.42190345683867	keratinocyte
-42.447465953820526	naive regulatory t cell
-63.57939640210523	hillock-club cell of prostate epithelium
-29.279444727162335	ciliated cell
-48.70467780835212	pancreatic pp cell
-54.726801691449076	liver dendritic cell
-50.97439014791517	erythroid progenitor
-27.45867902749908	cd8-positive, alpha-beta cytotoxic t cell
-42.04331420757014	salivary gland cell
-57.25408823480491	ciliated epithelial cell
-41.22639034855245	small intestine goblet cell
-47.612888043118645	myofibroblast cell
-18.40888067279346	mature enterocyte
-29.508953549469663	pancreatic beta cell
-53.934725559208	artery endothelial cell
-58.08096629542678	bladder urothelial cell
-59.41941808449556	transit amplifying cell of small intestine
-34.63334457565055	cell of skeletal muscle
-47.307451654682694	ciliary body
-42.94980629129851	myeloid dendritic cell
-37.53098902947359	retinal blood vessel endothelial cell
-33.98454929241127	fibroblast of cardiac tissue
-36.0388188652272	duct epithelial cell
-45.52541128515995	retinal pigment epithelial cell
-49.97071501103357	intrahepatic cholangiocyte
-44.807626076170116	t follicular helper cell
-43.68249210019314	bronchial smooth muscle cell
-39.177117054604985	microglial cell
-45.29705525640547	epithelial cell
-60.61304742805326	tracheal goblet cell
-38.46001608899719	myometrial cell
-38.57423281017352	eye photoreceptor cell
-31.161323884975992	naive thymus-derived cd4-positive, alpha-beta t cell
-56.20081968459151	kidney epithelial cell
-50.8344716316933	connective tissue cell
-26.3327970851078	cd4-positive helper t cell
-45.130145013762295	corneal keratocyte
-30.83131806029063	nk cell
-53.06725651003587	epithelial cell of lacrimal sac
-41.09125212683396	schwann cell
-55.94043913981877	intermediate monocyte
-51.60333367696901	immature enterocyte
-54.09753824473596	non-classical monocyte
-31.94160023629604	smooth muscle cell
-39.980724050426296	vein endothelial cell
-37.336480836969244	intestinal tuft cell
-48.670182892732804	lacrimal gland functional unit cell
-38.527008112394526	hepatocyte
-38.39202748925902	plasma cell
-25.833822319793136	classical monocyte
-41.00910021400271	luminal epithelial cell of mammary gland
-40.07878238112671	intestinal enteroendocrine cell
-42.84276599635366	endothelial cell of vascular tree
-55.45643195233949	retinal bipolar neuron
-59.03432677139531	adipocyte
-39.447144738676336	ocular surface cell
-34.813664643470744	fast muscle cell
-55.555218491546924	immature natural killer cell
-59.69511741838885	cd4-positive, alpha-beta memory t cell
-45.42607300418199	club cell of prostate epithelium
-45.39761419878115	mesothelial cell
-32.883036352726805	pancreatic acinar cell
-62.57184138302787	intestinal crypt stem cell
-42.52030980599906	basal cell
-39.47582412974132	duodenum glandular cell
-30.689551613223703	alveolar fibroblast
-45.64922760856862	corneal epithelial cell
-53.927711438597356	granulocyte
-57.73104556680074	pancreatic alpha cell
-41.08678391205935	pulmonary ionocyte
-47.619758046531786	secretory cell
-57.1906855141118	cd141-positive myeloid dendritic cell
-45.110487376835096	large intestine goblet cell
-55.228519188176854	myeloid cell
-49.12338348315445	myeloid progenitor
-31.081270396224937	type ii pneumocyte
-49.65141532951407	ionocyte
-29.86587433598982	immune cell
-21.299482287068074	hematopoietic stem cell
-25.167549621064286	capillary endothelial cell
-56.28837401761049	langerhans cell
-37.11811554078069	monocyte
-53.36802871284252	skeletal muscle satellite stem cell
-48.38874001213925	enterocyte of epithelium of large intestine
-58.71368772010746	dn1 thymic pro-t cell
-43.716473327523296	mesenchymal stem cell
-43.42360531068671	cd1c-positive myeloid dendritic cell
-48.358468461837475	serous cell of epithelium of bronchus
-32.13030820606278	muller cell
-68.93850354964927	b cell
-29.394756231898462	goblet cell
-62.89851412641002	melanocyte
-52.76159690400145	retinal ganglion cell
-40.303121665872695	basal cell of prostate epithelium
-50.51476425968036	endothelial cell
-27.154893554284453	enterocyte of epithelium of small intestine
-52.93488856162649	cd8-positive, alpha-beta cytokine secreting effector t cell
-58.2143616621098	dn4 thymocyte
-48.9200366629094	conjunctival epithelial cell
-41.838435790945915	nampt neutrophil
-36.85906605170796	lung ciliated cell
-30.049371457905234	fibroblast
-40.771124249331194	hillock cell of prostate epithelium
-30.691495712839124	retina horizontal cell
-55.03316602450747	dendritic cell
-19.39276020627403	bronchial vessel endothelial cell
-51.27268437636437	medullary thymic epithelial cell
-43.28682372056123	pancreatic stellate cell
-47.94916605641116	dn3 thymocyte
-35.84133365843957	endothelial cell of hepatic sinusoid
-39.57986855956872	limbal stromal cell
-49.57622988114572	endothelial cell of lymphatic vessel
-55.30879874097636	plasmablast
-43.498128261505634	lung microvascular endothelial cell
-54.28562302933955	regulatory t cell
-52.70372054064608	lymphatic endothelial cell
-39.86231785863235	intestinal crypt stem cell of small intestine
-63.55528908781991	pancreatic ductal cell
-64.04478452052317	cardiac muscle cell
-49.28042975535596	paneth cell of epithelium of small intestine
-53.47418039047756	double-positive, alpha-beta thymocyte
-46.8728669854361	mature conventional dendritic cell
-50.76219282906932	pancreatic delta cell
-75.31446134518086	memory b cell
-53.47733324958924	mature nk t cell
-65.34939621033693	stromal cell
-43.41790593578363	luminal cell of prostate epithelium
-66.26069216964848	radial glial cell
-41.94923792498467	respiratory goblet cell
-54.607874019954494	sperm
-63.70385454220499	type i nk t cell
-44.69870466955621	endothelial cell of artery
-55.5578554838483	pericyte cell
-47.872465808532326	tendon cell
-55.11518772916475	limbal stem cell
-49.27484513503509	club cell
-52.615484969620184	fibroblast of breast
-51.74734461927942	macrophage
-56.271987724333734	mucus secreting cell
-31.219609587235404	tongue muscle cell
-39.10125321267951	acinar cell of salivary gland
-41.44505716125073	cardiac endothelial cell
-40.26662881538059	myoepithelial cell
-14.299679820389933	intestinal crypt stem cell of large intestine
-25.605461006940914	cd24 neutrophil
-43.10977019149489	plasmacytoid dendritic cell
+47.25478206254911	muscle cell
+13.453702676520502	gut endothelial cell
+46.44700378453614	vascular associated smooth muscle cell
+55.691095482675955	transit amplifying cell of large intestine
+55.22237151384465	paneth cell of epithelium of large intestine
+36.37025780394042	respiratory mucous cell
+55.57134548083172	serous cell of epithelium of trachea
+52.56364676701367	epithelial cell of uterus
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data/safe_neighborhoods_enriched.csv

@@ -1,157 +1,157 @@
 Neighborhoods Enriched	Label
-200.0	muscle cell
-255.0	gut endothelial cell
-129.0	vascular associated smooth muscle cell
-129.0	transit amplifying cell of large intestine
-214.0	paneth cell of epithelium of large intestine
-226.0	respiratory mucous cell
-86.0	serous cell of epithelium of trachea
-161.0	epithelial cell of uterus
-238.0	adventitial cell
-280.0	type i pneumocyte
-127.0	keratinocyte
-249.0	naive regulatory t cell
-124.0	hillock-club cell of prostate epithelium
-284.0	ciliated cell
-193.0	pancreatic pp cell
-170.0	liver dendritic cell
-221.0	erythroid progenitor
-142.0	cd8-positive, alpha-beta cytotoxic t cell
-191.0	salivary gland cell
-99.0	ciliated epithelial cell
-193.0	small intestine goblet cell
-190.0	myofibroblast cell
-269.0	mature enterocyte
-304.0	pancreatic beta cell
-190.0	artery endothelial cell
-111.0	bladder urothelial cell
-148.0	transit amplifying cell of small intestine
-345.0	cell of skeletal muscle
-271.0	ciliary body
-296.0	myeloid dendritic cell
-238.0	retinal blood vessel endothelial cell
-345.0	fibroblast of cardiac tissue
-234.0	duct epithelial cell
-238.0	retinal pigment epithelial cell
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 113.0	endothelial cell of vascular tree
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+150.0	basal cell of prostate epithelium
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+407.0	enterocyte of epithelium of small intestine
+179.0	cd8-positive, alpha-beta cytokine secreting effector t cell
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+168.0	double-positive, alpha-beta thymocyte
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 124.0	stromal cell
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-68.0	sperm
-84.0	type i nk t cell
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 446.0	tongue muscle cell
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