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- .gitattributes +150 -0
- output/preprocess/Atherosclerosis/clinical_data/GSE109048.csv +2 -0
- output/preprocess/Atherosclerosis/clinical_data/GSE123086.csv +4 -0
- output/preprocess/Atherosclerosis/clinical_data/GSE123088.csv +4 -0
- output/preprocess/Atherosclerosis/clinical_data/GSE125771.csv +4 -0
- output/preprocess/Atherosclerosis/clinical_data/GSE133601.csv +2 -0
- output/preprocess/Atherosclerosis/clinical_data/GSE154851.csv +4 -0
- output/preprocess/Atherosclerosis/clinical_data/GSE57691.csv +2 -0
- output/preprocess/Atherosclerosis/clinical_data/GSE83500.csv +4 -0
- output/preprocess/Atherosclerosis/clinical_data/GSE87005.csv +4 -0
- output/preprocess/Atherosclerosis/clinical_data/GSE90074.csv +4 -0
- output/preprocess/Atherosclerosis/cohort_info.json +82 -0
- output/preprocess/Atherosclerosis/gene_data/GSE133601.csv +0 -0
- output/preprocess/Glioblastoma/TCGA.csv +3 -0
- output/preprocess/Glioblastoma/gene_data/TCGA.csv +3 -0
- output/preprocess/Head_and_Neck_Cancer/TCGA.csv +3 -0
- output/preprocess/Head_and_Neck_Cancer/gene_data/TCGA.csv +3 -0
- output/preprocess/Head_and_Neck_Cancer/gene_data/TCGA_original.csv +3 -0
- output/preprocess/Height/gene_data/TCGA.csv +3 -0
- output/preprocess/Hemochromatosis/TCGA.csv +3 -0
- output/preprocess/Hemochromatosis/gene_data/TCGA.csv +3 -0
- output/preprocess/Hepatitis/TCGA.csv +3 -0
- output/preprocess/Hepatitis/gene_data/GSE124719.csv +3 -0
- output/preprocess/Hepatitis/gene_data/GSE125860.csv +3 -0
- output/preprocess/Huntingtons_Disease/GSE135589.csv +3 -0
- output/preprocess/Huntingtons_Disease/GSE154141.csv +3 -0
- output/preprocess/Huntingtons_Disease/GSE34201.csv +3 -0
- output/preprocess/Huntingtons_Disease/GSE34721.csv +3 -0
- output/preprocess/Huntingtons_Disease/clinical_data/GSE135589.csv +4 -0
- output/preprocess/Huntingtons_Disease/clinical_data/GSE34201.csv +3 -0
- output/preprocess/Huntingtons_Disease/clinical_data/GSE34721.csv +3 -0
- output/preprocess/Huntingtons_Disease/clinical_data/GSE71220.csv +1 -0
- output/preprocess/Huntingtons_Disease/clinical_data/TCGA.csv +703 -0
- output/preprocess/Huntingtons_Disease/gene_data/GSE135589.csv +3 -0
- output/preprocess/Huntingtons_Disease/gene_data/GSE154141.csv +3 -0
- output/preprocess/Huntingtons_Disease/gene_data/GSE154141_mapping_issue.txt +6 -0
- output/preprocess/Huntingtons_Disease/gene_data/GSE26927.csv +3 -0
- output/preprocess/Huntingtons_Disease/gene_data/GSE34201.csv +3 -0
- output/preprocess/Huntingtons_Disease/gene_data/GSE34721.csv +3 -0
- output/preprocess/Huntingtons_Disease/gene_data/GSE95843.csv +3 -0
- output/preprocess/Hutchinson-Gilford_Progeria_Syndrome/clinical_data/GSE84351.csv +3 -0
- output/preprocess/Hutchinson-Gilford_Progeria_Syndrome/clinical_data/GSE84360.csv +3 -0
- output/preprocess/Hutchinson-Gilford_Progeria_Syndrome/cohort_info.json +32 -0
- output/preprocess/Hutchinson-Gilford_Progeria_Syndrome/gene_data/GSE84351.csv +3 -0
- output/preprocess/Hypertension/GSE128381.csv +3 -0
- output/preprocess/Hypertension/GSE151158.csv +0 -0
- output/preprocess/Hypertension/GSE161533.csv +3 -0
- output/preprocess/Hypertension/GSE71994.csv +3 -0
- output/preprocess/Hypertension/GSE77627.csv +3 -0
- output/preprocess/Hypertension/clinical_data/GSE117261.csv +3 -0
.gitattributes
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output/preprocess/Heart_rate/gene_data/GSE18583.csv filter=lfs diff=lfs merge=lfs -text
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output/preprocess/HIV_Resistance/gene_data/GSE33580.csv filter=lfs diff=lfs merge=lfs -text
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output/preprocess/Heart_rate/gene_data/GSE18583.csv filter=lfs diff=lfs merge=lfs -text
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output/preprocess/HIV_Resistance/gene_data/GSE33580.csv filter=lfs diff=lfs merge=lfs -text
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output/preprocess/HIV_Resistance/gene_data/TCGA.csv filter=lfs diff=lfs merge=lfs -text
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output/preprocess/Hepatitis/gene_data/GSE125860.csv filter=lfs diff=lfs merge=lfs -text
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output/preprocess/Glioblastoma/TCGA.csv filter=lfs diff=lfs merge=lfs -text
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output/preprocess/Huntingtons_Disease/GSE154141.csv filter=lfs diff=lfs merge=lfs -text
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output/preprocess/Height/gene_data/TCGA.csv filter=lfs diff=lfs merge=lfs -text
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output/preprocess/Hepatitis/gene_data/GSE124719.csv filter=lfs diff=lfs merge=lfs -text
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output/preprocess/Huntingtons_Disease/gene_data/GSE154141.csv filter=lfs diff=lfs merge=lfs -text
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output/preprocess/Huntingtons_Disease/gene_data/GSE34201.csv filter=lfs diff=lfs merge=lfs -text
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output/preprocess/Huntingtons_Disease/gene_data/GSE26927.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Head_and_Neck_Cancer/GSE156915.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Osteoarthritis/GSE56409.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Osteoarthritis/GSE93720.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Multiple_sclerosis/GSE146383.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Osteoarthritis/gene_data/GSE142049.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Osteoarthritis/gene_data/GSE236924.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Osteoarthritis/gene_data/GSE56409.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Osteoarthritis/gene_data/GSE75181.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Mitochondrial_Disorders/GSE65399.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Osteoporosis/gene_data/GSE20881.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Osteoporosis/gene_data/GSE80614.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Osteoporosis/gene_data/GSE84500.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Parkinsons_Disease/GSE103099.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Parkinsons_Disease/GSE202665.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Obesity/GSE84046.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Parkinsons_Disease/GSE30335.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Ocular_Melanomas/GSE78033.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Mitochondrial_Disorders/GSE30933.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Multiple_sclerosis/GSE189788.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Parkinsons_Disease/gene_data/GSE103099.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Parkinsons_Disease/gene_data/GSE202665.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Parkinsons_Disease/gene_data/GSE202667.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Parkinsons_Disease/gene_data/GSE30335.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Parkinsons_Disease/gene_data/GSE57475.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Parkinsons_Disease/gene_data/GSE71220.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Parkinsons_Disease/gene_data/GSE80599.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Peptic_ulcer_disease/TCGA.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Peptic_ulcer_disease/gene_data/GSE43580.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Peptic_ulcer_disease/gene_data/TCGA.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Pheochromocytoma_and_Paraganglioma/GSE19422.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Pheochromocytoma_and_Paraganglioma/GSE39716.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Pheochromocytoma_and_Paraganglioma/GSE67066.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Pheochromocytoma_and_Paraganglioma/gene_data/GSE19422.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Pheochromocytoma_and_Paraganglioma/gene_data/GSE33371.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Pheochromocytoma_and_Paraganglioma/gene_data/GSE39716.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Pheochromocytoma_and_Paraganglioma/gene_data/GSE67066.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Pheochromocytoma_and_Paraganglioma/gene_data/TCGA.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Polycystic_Kidney_Disease/gene_data/TCGA.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Polycystic_Ovary_Syndrome/gene_data/TCGA.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Obsessive-Compulsive_Disorder/GSE60190.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Post-Traumatic_Stress_Disorder/GSE63878.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Post-Traumatic_Stress_Disorder/GSE64814.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Osteoarthritis/GSE107105.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Osteoarthritis/GSE236924.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Parkinsons_Disease/GSE202667.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Parkinsons_Disease/GSE80599.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Osteoarthritis/gene_data/GSE107105.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Osteoporosis/GSE20881.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Kidney_stones/TCGA.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Psoriatic_Arthritis/GSE142049.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Psoriatic_Arthritis/GSE57405.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Psoriatic_Arthritis/gene_data/GSE61281.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Rectal_Cancer/GSE123390.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Prostate_Cancer/GSE200879.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Rectal_Cancer/TCGA.csv filter=lfs diff=lfs merge=lfs -text
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p3/preprocess/Psoriatic_Arthritis/GSE57386.csv filter=lfs diff=lfs merge=lfs -text
|
2095 |
+
p3/preprocess/Sarcoma/gene_data/TCGA.csv filter=lfs diff=lfs merge=lfs -text
|
2096 |
+
p3/preprocess/Sarcoma/GSE159847.csv filter=lfs diff=lfs merge=lfs -text
|
2097 |
+
p3/preprocess/Retinoblastoma/GSE25307.csv filter=lfs diff=lfs merge=lfs -text
|
2098 |
+
p3/preprocess/Head_and_Neck_Cancer/TCGA.csv filter=lfs diff=lfs merge=lfs -text
|
2099 |
+
p3/preprocess/Schizophrenia/GSE285666.csv filter=lfs diff=lfs merge=lfs -text
|
2100 |
+
p3/preprocess/Parkinsons_Disease/GSE71220.csv filter=lfs diff=lfs merge=lfs -text
|
2101 |
+
p3/preprocess/Schizophrenia/gene_data/GSE145554.csv filter=lfs diff=lfs merge=lfs -text
|
2102 |
+
p3/preprocess/Schizophrenia/gene_data/GSE165813.csv filter=lfs diff=lfs merge=lfs -text
|
2103 |
+
p3/preprocess/Depression/TCGA.csv filter=lfs diff=lfs merge=lfs -text
|
2104 |
+
p3/preprocess/Schizophrenia/gene_data/GSE285666.csv filter=lfs diff=lfs merge=lfs -text
|
2105 |
+
p3/preprocess/Sarcoma/gene_data/GSE159847.csv filter=lfs diff=lfs merge=lfs -text
|
2106 |
+
p3/preprocess/Sickle_Cell_Anemia/gene_data/GSE117613.csv filter=lfs diff=lfs merge=lfs -text
|
2107 |
+
p3/preprocess/Sickle_Cell_Anemia/gene_data/TCGA.csv filter=lfs diff=lfs merge=lfs -text
|
2108 |
+
p3/preprocess/Sarcoma/GSE162789.csv filter=lfs diff=lfs merge=lfs -text
|
2109 |
+
output/preprocess/Huntingtons_Disease/GSE34721.csv filter=lfs diff=lfs merge=lfs -text
|
2110 |
+
output/preprocess/Huntingtons_Disease/GSE135589.csv filter=lfs diff=lfs merge=lfs -text
|
2111 |
+
output/preprocess/Glioblastoma/gene_data/TCGA.csv filter=lfs diff=lfs merge=lfs -text
|
2112 |
+
output/preprocess/Huntingtons_Disease/gene_data/GSE95843.csv filter=lfs diff=lfs merge=lfs -text
|
2113 |
+
output/preprocess/Hutchinson-Gilford_Progeria_Syndrome/gene_data/GSE84351.csv filter=lfs diff=lfs merge=lfs -text
|
2114 |
+
output/preprocess/Head_and_Neck_Cancer/TCGA.csv filter=lfs diff=lfs merge=lfs -text
|
2115 |
+
output/preprocess/Huntingtons_Disease/gene_data/GSE135589.csv filter=lfs diff=lfs merge=lfs -text
|
2116 |
+
output/preprocess/Hypertension/GSE128381.csv filter=lfs diff=lfs merge=lfs -text
|
2117 |
+
output/preprocess/Huntingtons_Disease/gene_data/GSE34721.csv filter=lfs diff=lfs merge=lfs -text
|
2118 |
+
output/preprocess/Hypertension/GSE161533.csv filter=lfs diff=lfs merge=lfs -text
|
2119 |
+
output/preprocess/Hypertension/GSE71994.csv filter=lfs diff=lfs merge=lfs -text
|
2120 |
+
output/preprocess/Hemochromatosis/TCGA.csv filter=lfs diff=lfs merge=lfs -text
|
2121 |
+
output/preprocess/Hypertension/GSE77627.csv filter=lfs diff=lfs merge=lfs -text
|
2122 |
+
output/preprocess/Hemochromatosis/gene_data/TCGA.csv filter=lfs diff=lfs merge=lfs -text
|
2123 |
+
output/preprocess/Head_and_Neck_Cancer/gene_data/TCGA.csv filter=lfs diff=lfs merge=lfs -text
|
2124 |
+
output/preprocess/Hypertension/gene_data/GSE128381.csv filter=lfs diff=lfs merge=lfs -text
|
2125 |
+
output/preprocess/Hepatitis/TCGA.csv filter=lfs diff=lfs merge=lfs -text
|
2126 |
+
output/preprocess/Head_and_Neck_Cancer/gene_data/TCGA_original.csv filter=lfs diff=lfs merge=lfs -text
|
2127 |
+
output/preprocess/Hypertension/gene_data/GSE161533.csv filter=lfs diff=lfs merge=lfs -text
|
output/preprocess/Atherosclerosis/clinical_data/GSE109048.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
,GSM2928447,GSM2928448,GSM2928449,GSM2928450,GSM2928451,GSM2928452,GSM2928453,GSM2928454,GSM2928455,GSM2928456,GSM2928457,GSM2928458,GSM2928459,GSM2928460,GSM2928461,GSM2928462,GSM2928463,GSM2928464,GSM2928465,GSM2928466,GSM2928467,GSM2928468,GSM2928469,GSM2928470,GSM2928471,GSM2928472,GSM2928473,GSM2928474,GSM2928475,GSM2928476,GSM2928477,GSM2928478,GSM2928479,GSM2928480,GSM2928481,GSM2928482,GSM2928483,GSM2928484,GSM2928485,GSM2928486,GSM2928487,GSM2928488,GSM2928489,GSM2928490,GSM2928491,GSM2928492,GSM2928493,GSM2928494,GSM2928495,GSM2928496,GSM2928497,GSM2928498,GSM2928499,GSM2928500,GSM2928501,GSM2928502,GSM2928503
|
2 |
+
Atherosclerosis,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0
|
output/preprocess/Atherosclerosis/clinical_data/GSE123086.csv
ADDED
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
GSM3494884,GSM3494885,GSM3494886,GSM3494887,GSM3494888,GSM3494889,GSM3494890,GSM3494891,GSM3494892,GSM3494893,GSM3494894,GSM3494895,GSM3494896,GSM3494897,GSM3494898,GSM3494899,GSM3494900,GSM3494901,GSM3494902,GSM3494903,GSM3494904,GSM3494905,GSM3494906,GSM3494907,GSM3494908,GSM3494909,GSM3494910,GSM3494911,GSM3494912,GSM3494913,GSM3494914,GSM3494915,GSM3494916,GSM3494917,GSM3494918,GSM3494919,GSM3494920,GSM3494921,GSM3494922,GSM3494923,GSM3494924,GSM3494925,GSM3494926,GSM3494927,GSM3494928,GSM3494929,GSM3494930,GSM3494931,GSM3494932,GSM3494933,GSM3494934,GSM3494935,GSM3494936,GSM3494937,GSM3494938,GSM3494939,GSM3494940,GSM3494941,GSM3494942,GSM3494943,GSM3494944,GSM3494945,GSM3494946,GSM3494947,GSM3494948,GSM3494949,GSM3494950,GSM3494951,GSM3494952,GSM3494953,GSM3494954,GSM3494955,GSM3494956,GSM3494957,GSM3494958,GSM3494959,GSM3494960,GSM3494961,GSM3494962,GSM3494963,GSM3494964,GSM3494965,GSM3494966,GSM3494967,GSM3494968,GSM3494969,GSM3494970,GSM3494971,GSM3494972,GSM3494973,GSM3494974,GSM3494975,GSM3494976,GSM3494977,GSM3494978,GSM3494979,GSM3494980,GSM3494981,GSM3494982,GSM3494983,GSM3494984,GSM3494985,GSM3494986,GSM3494987,GSM3494988,GSM3494989,GSM3494990,GSM3494991,GSM3494992,GSM3494993,GSM3494994,GSM3494995,GSM3494996,GSM3494997,GSM3494998,GSM3494999,GSM3495000,GSM3495001,GSM3495002,GSM3495003,GSM3495004,GSM3495005,GSM3495006,GSM3495007,GSM3495008,GSM3495009,GSM3495010,GSM3495011,GSM3495012,GSM3495013,GSM3495014,GSM3495015,GSM3495016,GSM3495017,GSM3495018,GSM3495019,GSM3495020,GSM3495021,GSM3495022,GSM3495023,GSM3495024,GSM3495025,GSM3495026,GSM3495027,GSM3495028,GSM3495029,GSM3495030,GSM3495031,GSM3495032,GSM3495033,GSM3495034,GSM3495035,GSM3495036,GSM3495037,GSM3495038,GSM3495039,GSM3495040,GSM3495041,GSM3495042,GSM3495043,GSM3495044,GSM3495045,GSM3495046,GSM3495047,GSM3495048,GSM3495049
|
2 |
+
0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
|
3 |
+
56.0,,20.0,51.0,37.0,61.0,,31.0,56.0,41.0,61.0,,80.0,53.0,61.0,73.0,60.0,76.0,77.0,74.0,69.0,77.0,81.0,70.0,82.0,69.0,82.0,67.0,67.0,78.0,67.0,74.0,,51.0,72.0,66.0,80.0,36.0,67.0,31.0,31.0,45.0,56.0,65.0,53.0,48.0,50.0,76.0,,24.0,42.0,76.0,22.0,,23.0,34.0,43.0,47.0,24.0,55.0,48.0,58.0,30.0,28.0,41.0,63.0,55.0,55.0,67.0,47.0,46.0,49.0,23.0,68.0,39.0,24.0,36.0,58.0,38.0,27.0,67.0,61.0,69.0,63.0,60.0,17.0,10.0,9.0,13.0,10.0,13.0,15.0,12.0,13.0,81.0,94.0,51.0,40.0,,97.0,23.0,93.0,58.0,28.0,54.0,15.0,8.0,11.0,12.0,8.0,14.0,8.0,10.0,14.0,13.0,40.0,52.0,42.0,29.0,43.0,41.0,54.0,42.0,49.0,45.0,56.0,64.0,71.0,48.0,20.0,53.0,32.0,26.0,28.0,47.0,24.0,48.0,,19.0,41.0,38.0,,15.0,12.0,13.0,,11.0,,16.0,11.0,,35.0,26.0,39.0,46.0,42.0,20.0,69.0,69.0,47.0,47.0,56.0,54.0,53.0,50.0,22.0
|
4 |
+
1.0,,0.0,0.0,1.0,1.0,,1.0,0.0,0.0,0.0,,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,,1.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,,0.0,0.0,1.0,1.0,,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,,1.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,,0.0,0.0,0.0,,0.0,1.0,0.0,,1.0,,1.0,1.0,,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0
|
output/preprocess/Atherosclerosis/clinical_data/GSE123088.csv
ADDED
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
GSM3494884,GSM3494885,GSM3494886,GSM3494887,GSM3494888,GSM3494889,GSM3494890,GSM3494891,GSM3494892,GSM3494893,GSM3494894,GSM3494895,GSM3494896,GSM3494897,GSM3494898,GSM3494899,GSM3494900,GSM3494901,GSM3494902,GSM3494903,GSM3494904,GSM3494905,GSM3494906,GSM3494907,GSM3494908,GSM3494909,GSM3494910,GSM3494911,GSM3494912,GSM3494913,GSM3494914,GSM3494915,GSM3494916,GSM3494917,GSM3494918,GSM3494919,GSM3494920,GSM3494921,GSM3494922,GSM3494923,GSM3494924,GSM3494925,GSM3494926,GSM3494927,GSM3494928,GSM3494929,GSM3494930,GSM3494931,GSM3494932,GSM3494933,GSM3494934,GSM3494935,GSM3494936,GSM3494937,GSM3494938,GSM3494939,GSM3494940,GSM3494941,GSM3494942,GSM3494943,GSM3494944,GSM3494945,GSM3494946,GSM3494947,GSM3494948,GSM3494949,GSM3494950,GSM3494951,GSM3494952,GSM3494953,GSM3494954,GSM3494955,GSM3494956,GSM3494957,GSM3494958,GSM3494959,GSM3494960,GSM3494961,GSM3494962,GSM3494963,GSM3494964,GSM3494965,GSM3494966,GSM3494967,GSM3494968,GSM3494969,GSM3494970,GSM3494971,GSM3494972,GSM3494973,GSM3494974,GSM3494975,GSM3494976,GSM3494977,GSM3494978,GSM3494979,GSM3494980,GSM3494981,GSM3494982,GSM3494983,GSM3494984,GSM3494985,GSM3494986,GSM3494987,GSM3494988,GSM3494989,GSM3494990,GSM3494991,GSM3494992,GSM3494993,GSM3494994,GSM3494995,GSM3494996,GSM3494997,GSM3494998,GSM3494999,GSM3495000,GSM3495001,GSM3495002,GSM3495003,GSM3495004,GSM3495005,GSM3495006,GSM3495007,GSM3495008,GSM3495009,GSM3495010,GSM3495011,GSM3495012,GSM3495013,GSM3495014,GSM3495015,GSM3495016,GSM3495017,GSM3495018,GSM3495019,GSM3495020,GSM3495021,GSM3495022,GSM3495023,GSM3495024,GSM3495025,GSM3495026,GSM3495027,GSM3495028,GSM3495029,GSM3495030,GSM3495031,GSM3495032,GSM3495033,GSM3495034,GSM3495035,GSM3495036,GSM3495037,GSM3495038,GSM3495039,GSM3495040,GSM3495041,GSM3495042,GSM3495043,GSM3495044,GSM3495045,GSM3495046,GSM3495047,GSM3495048,GSM3495049,GSM3495050,GSM3495051,GSM3495052,GSM3495053,GSM3495054,GSM3495055,GSM3495056,GSM3495057,GSM3495058,GSM3495059,GSM3495060,GSM3495061,GSM3495062,GSM3495063,GSM3495064,GSM3495065,GSM3495066,GSM3495067,GSM3495068,GSM3495069,GSM3495070,GSM3495071,GSM3495072,GSM3495073,GSM3495074,GSM3495075,GSM3495076,GSM3495077,GSM3495078,GSM3495079,GSM3495080,GSM3495081,GSM3495082,GSM3495083,GSM3495084,GSM3495085,GSM3495086,GSM3495087
|
2 |
+
0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
|
3 |
+
56.0,,20.0,51.0,37.0,61.0,,31.0,56.0,41.0,61.0,,80.0,53.0,61.0,73.0,60.0,76.0,77.0,74.0,69.0,77.0,81.0,70.0,82.0,69.0,82.0,67.0,67.0,78.0,67.0,74.0,,51.0,72.0,66.0,80.0,36.0,67.0,31.0,31.0,45.0,56.0,65.0,53.0,48.0,50.0,76.0,,24.0,42.0,76.0,22.0,,23.0,34.0,43.0,47.0,24.0,55.0,48.0,58.0,30.0,28.0,41.0,63.0,55.0,55.0,67.0,47.0,46.0,49.0,23.0,68.0,39.0,24.0,36.0,58.0,38.0,27.0,67.0,61.0,69.0,63.0,60.0,17.0,10.0,9.0,13.0,10.0,13.0,15.0,12.0,13.0,81.0,94.0,51.0,40.0,,97.0,23.0,93.0,58.0,28.0,54.0,15.0,8.0,11.0,12.0,8.0,14.0,8.0,10.0,14.0,13.0,40.0,52.0,42.0,29.0,43.0,41.0,54.0,42.0,49.0,45.0,56.0,64.0,71.0,48.0,20.0,53.0,32.0,26.0,28.0,47.0,24.0,48.0,,19.0,41.0,38.0,,15.0,12.0,13.0,,11.0,,16.0,11.0,,35.0,26.0,39.0,46.0,42.0,20.0,69.0,69.0,47.0,47.0,56.0,54.0,53.0,50.0,22.0,62.0,74.0,57.0,47.0,70.0,50.0,52.0,43.0,57.0,53.0,70.0,41.0,61.0,39.0,58.0,55.0,63.0,60.0,43.0,68.0,67.0,50.0,67.0,51.0,59.0,44.0,35.0,83.0,78.0,88.0,41.0,60.0,72.0,53.0,73.0,56.0,38.0,53.0
|
4 |
+
1.0,,0.0,0.0,1.0,1.0,,1.0,0.0,0.0,0.0,,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,,1.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,,0.0,0.0,1.0,1.0,,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,,1.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,,0.0,0.0,0.0,,0.0,1.0,0.0,,1.0,,1.0,1.0,,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
|
output/preprocess/Atherosclerosis/clinical_data/GSE125771.csv
ADDED
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
GSM3581706,GSM3581707,GSM3581708,GSM3581709,GSM3581710,GSM3581711,GSM3581712,GSM3581713,GSM3581714,GSM3581715,GSM3581716,GSM3581717,GSM3581718,GSM3581719,GSM3581720,GSM3581721,GSM3581722,GSM3581723,GSM3581724,GSM3581725,GSM3581726,GSM3581727,GSM3581728,GSM3581729,GSM3581730,GSM3581731,GSM3581732,GSM3581733,GSM3581734,GSM3581735,GSM3581736,GSM3581737,GSM3581738,GSM3581739,GSM3581740,GSM3581741,GSM3581742,GSM3581743,GSM3581744,GSM3581745
|
2 |
+
1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0
|
3 |
+
73.0,60.0,81.0,85.0,60.0,84.0,76.0,57.0,71.0,69.0,79.0,78.0,79.0,54.0,72.0,73.0,64.0,67.0,63.0,75.0,62.0,64.0,73.0,81.0,79.0,72.0,71.0,75.0,74.0,76.0,69.0,65.0,83.0,85.0,61.0,72.0,64.0,69.0,61.0,71.0
|
4 |
+
1.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0
|
output/preprocess/Atherosclerosis/clinical_data/GSE133601.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
,GSM3912810,GSM3912811,GSM3912812,GSM3912813,GSM3912814,GSM3912815,GSM3912816,GSM3912817,GSM3912818,GSM3912819,GSM3912820,GSM3912821,GSM3912822,GSM3912823,GSM3912824,GSM3912825,GSM3912826,GSM3912827,GSM3912828,GSM3912829,GSM3912830,GSM3912831,GSM3912832,GSM3912833,GSM3912834,GSM3912835,GSM3912836,GSM3912837,GSM3912838,GSM3912839
|
2 |
+
Atherosclerosis,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
|
output/preprocess/Atherosclerosis/clinical_data/GSE154851.csv
ADDED
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
,GSM4681537,GSM4681538,GSM4681539,GSM4681540,GSM4681541,GSM4681542,GSM4681543,GSM4681544,GSM4681545,GSM4681546,GSM4681547,GSM4681548,GSM4681549,GSM4681550,GSM4681551,GSM4681552,GSM4681553,GSM4681554,GSM4681555,GSM4681556,GSM4681557,GSM4681558,GSM4681559,GSM4681560,GSM4681561,GSM4681562,GSM4681563,GSM4681564,GSM4681565,GSM4681566,GSM4681567,GSM4681568,GSM4681569,GSM4681570,GSM4681571,GSM4681572,GSM4681573,GSM4681574,GSM4681575,GSM4681576,GSM4681577,GSM4681578,GSM4681579,GSM4681580,GSM4681581,GSM4681582,GSM4681583,GSM4681584,GSM4681585,GSM4681586,GSM4681587,GSM4681588,GSM4681589,GSM4681590,GSM4681591,GSM4681592,GSM4681593,GSM4681594,GSM4681595,GSM4681596,GSM4681597,GSM4681598,GSM4681599,GSM4681600,GSM4681601,GSM4681602,GSM4681603,GSM4681604,GSM4681605,GSM4681606
|
2 |
+
Atherosclerosis,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
|
3 |
+
Age,18.0,37.0,59.0,36.0,56.0,22.0,53.0,41.0,33.0,52.0,42.0,28.0,45.0,41.0,25.0,34.0,40.0,44.0,42.0,39.0,51.0,41.0,52.0,34.0,21.0,23.0,32.0,39.0,71.0,23.0,44.0,26.0,31.0,24.0,23.0,31.0,30.0,47.0,30.0,24.0,35.0,25.0,25.0,33.0,19.0,23.0,36.0,26.0,27.0,28.0,34.0,30.0,39.0,32.0,26.0,22.0,25.0,32.0,33.0,41.0,31.0,48.0,38.0,30.0,27.0,23.0,41.0,36.0,34.0,54.0
|
4 |
+
Gender,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
|
output/preprocess/Atherosclerosis/clinical_data/GSE57691.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
,GSM1386783,GSM1386784,GSM1386785,GSM1386786,GSM1386787,GSM1386788,GSM1386789,GSM1386790,GSM1386791,GSM1386792,GSM1386793,GSM1386794,GSM1386795,GSM1386796,GSM1386797,GSM1386798,GSM1386799,GSM1386800,GSM1386801,GSM1386802,GSM1386803,GSM1386804,GSM1386805,GSM1386806,GSM1386807,GSM1386808,GSM1386809,GSM1386810,GSM1386811,GSM1386812,GSM1386813,GSM1386814,GSM1386815,GSM1386816,GSM1386817,GSM1386818,GSM1386819,GSM1386820,GSM1386821,GSM1386822,GSM1386823,GSM1386824,GSM1386825,GSM1386826,GSM1386827,GSM1386828,GSM1386829,GSM1386830,GSM1386831,GSM1386832,GSM1386833,GSM1386834,GSM1386835,GSM1386836,GSM1386837,GSM1386838,GSM1386839,GSM1386840,GSM1386841,GSM1386842,GSM1386843,GSM1386844,GSM1386845,GSM1386846,GSM1386847,GSM1386848,GSM1386849,GSM1386850
|
2 |
+
Atherosclerosis,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
|
output/preprocess/Atherosclerosis/clinical_data/GSE83500.csv
ADDED
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
,GSM2204583,GSM2204584,GSM2204585,GSM2204586,GSM2204587,GSM2204588,GSM2204589,GSM2204590,GSM2204591,GSM2204592,GSM2204593,GSM2204594,GSM2204595,GSM2204596,GSM2204597,GSM2204598,GSM2204599,GSM2204600,GSM2204601,GSM2204602,GSM2204603,GSM2204604,GSM2204605,GSM2204606,GSM2204607,GSM2204608,GSM2204609,GSM2204610,GSM2204611,GSM2204612,GSM2204613,GSM2204614,GSM2204615,GSM2204616,GSM2204617,GSM2204618,GSM2204619
|
2 |
+
Atherosclerosis,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0
|
3 |
+
Age,69.0,56.0,56.0,53.0,58.0,70.0,50.0,61.0,63.0,56.0,65.0,58.0,81.0,68.0,62.0,64.0,50.0,81.0,78.0,56.0,52.0,55.0,48.0,49.0,55.0,64.0,52.0,56.0,53.0,54.0,63.0,70.0,63.0,57.0,52.0,62.0,61.0
|
4 |
+
Gender,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0
|
output/preprocess/Atherosclerosis/clinical_data/GSE87005.csv
ADDED
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
,GSM2318735,GSM2318736,GSM2318737,GSM2318738,GSM2318739,GSM2318740,GSM2318741,GSM2318742,GSM2318743,GSM2318744,GSM2318745,GSM2318746,GSM2318747,GSM2318748,GSM2318749,GSM2318750,GSM2318751,GSM2318752,GSM2318753,GSM2318754,GSM2601251,GSM2601252,GSM2601253,GSM2601254,GSM2601255,GSM2601256,GSM2601257,GSM2601258,GSM2601259,GSM2601260,GSM2601261,GSM2601262,GSM2601263,GSM2601264,GSM2601265,GSM2601266,GSM2601267,GSM2601268,GSM2601269,GSM2601270
|
2 |
+
Atherosclerosis,0,1,1,1,1,1,1,0,0,0,1,0,0,0,0,0,0,1,0,0,0,1,0,0,1,0,1,1,0,0,1,0,0,0,0,1,0,1,1,0
|
3 |
+
Age,61,55,50,40,67,45,78,64,44,40,60,68,46,42,45,49,48,41,58,67,76,70,56,70,42,59,61,73,70,53,78,80,73,76,60,40,65,72,67,74
|
4 |
+
Gender,1,1,1,0,0,0,1,1,0,1,1,1,0,1,1,1,0,0,0,1,0,1,0,1,0,1,1,0,1,0,0,1,1,1,0,0,0,1,0,0
|
output/preprocess/Atherosclerosis/clinical_data/GSE90074.csv
ADDED
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
,GSM2397158,GSM2397159,GSM2397160,GSM2397161,GSM2397162,GSM2397163,GSM2397164,GSM2397165,GSM2397166,GSM2397167,GSM2397168,GSM2397169,GSM2397170,GSM2397171,GSM2397172,GSM2397173,GSM2397174,GSM2397175,GSM2397176,GSM2397177,GSM2397178,GSM2397179,GSM2397180,GSM2397181,GSM2397182,GSM2397183,GSM2397184,GSM2397185,GSM2397186,GSM2397187,GSM2397188,GSM2397189,GSM2397190,GSM2397191,GSM2397192,GSM2397193,GSM2397194,GSM2397195,GSM2397196,GSM2397197,GSM2397198,GSM2397199,GSM2397200,GSM2397201,GSM2397202,GSM2397203,GSM2397204,GSM2397205,GSM2397206,GSM2397207,GSM2397208,GSM2397209,GSM2397210,GSM2397211,GSM2397212,GSM2397213,GSM2397214,GSM2397215,GSM2397216,GSM2397217,GSM2397218,GSM2397219,GSM2397220,GSM2397221,GSM2397222,GSM2397223,GSM2397224,GSM2397225,GSM2397226,GSM2397227,GSM2397228,GSM2397229,GSM2397230,GSM2397231,GSM2397232,GSM2397233,GSM2397234,GSM2397235,GSM2397236,GSM2397237,GSM2397238,GSM2397239,GSM2397240,GSM2397241,GSM2397242,GSM2397243,GSM2397244,GSM2397245,GSM2397246,GSM2397247,GSM2397248,GSM2397249,GSM2397250,GSM2397251,GSM2397252,GSM2397253,GSM2397254,GSM2397255,GSM2397256,GSM2397257,GSM2397258,GSM2397259,GSM2397260,GSM2397261,GSM2397262,GSM2397263,GSM2397264,GSM2397265,GSM2397266,GSM2397267,GSM2397268,GSM2397269,GSM2397270,GSM2397271,GSM2397272,GSM2397273,GSM2397274,GSM2397275,GSM2397276,GSM2397277,GSM2397278,GSM2397279,GSM2397280,GSM2397281,GSM2397282,GSM2397283,GSM2397284,GSM2397285,GSM2397286,GSM2397287,GSM2397288,GSM2397289,GSM2397290,GSM2397291,GSM2397292,GSM2397293,GSM2397294,GSM2397295,GSM2397296,GSM2397297,GSM2397298,GSM2397299,GSM2397300
|
2 |
+
Atherosclerosis,1,1,1,0,1,1,0,0,1,1,0,1,0,1,0,0,1,0,1,0,1,0,1,0,0,0,1,1,0,0,0,0,0,1,1,0,0,1,0,1,1,0,0,1,0,0,0,0,1,0,1,0,0,0,0,1,0,1,0,0,1,1,1,0,0,0,1,1,1,0,0,0,1,1,0,0,1,1,0,0,0,1,0,0,0,1,1,1,0,0,0,0,0,1,0,0,0,1,0,1,0,1,0,0,1,0,1,0,0,0,0,0,1,0,0,1,0,0,0,0,0,1,0,1,1,1,0,0,1,0,0,1,1,0,1,0,0,0,0,0,0,1,1
|
3 |
+
Age,72,67,74,80,78,71,73,66,63,72,42,51,45,71,56,50,61,61,75,65,44,69,64,76,61,41,52,77,45,80,63,40,62,54,65,74,72,43,80,58,71,80,54,74,70,51,49,74,68,64,69,42,40,48,69,52,41,56,62,57,67,80,66,40,46,79,44,72,62,45,45,67,40,74,64,44,74,80,65,41,60,56,70,42,75,61,66,62,41,80,80,50,66,44,49,63,55,45,80,43,73,64,74,59,49,58,64,63,48,74,61,73,47,80,50,77,64,67,43,48,69,41,62,68,68,59,67,41,50,73,60,73,72,75,48,61,72,46,74,63,54,76,61
|
4 |
+
Gender,0,1,0,0,1,1,1,0,0,0,0,0,0,1,0,0,1,0,1,0,0,1,1,1,0,1,1,1,1,0,0,0,1,1,0,0,1,1,1,1,1,1,0,1,1,0,0,1,0,1,1,1,0,1,1,0,1,0,1,1,0,1,0,1,1,0,1,1,0,1,1,1,1,0,1,1,1,0,0,0,0,1,1,0,1,0,1,0,1,1,0,0,1,1,0,1,1,0,0,1,1,0,1,1,1,0,0,1,0,0,0,1,0,0,1,1,1,0,1,0,0,1,1,0,0,1,1,1,0,0,1,1,1,0,1,0,0,0,0,0,0,0,0
|
output/preprocess/Atherosclerosis/cohort_info.json
ADDED
@@ -0,0 +1,82 @@
|
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|
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|
|
|
1 |
+
{
|
2 |
+
"GSE90074": {
|
3 |
+
"is_usable": true,
|
4 |
+
"is_gene_available": true,
|
5 |
+
"is_trait_available": true,
|
6 |
+
"is_available": true,
|
7 |
+
"is_biased": false,
|
8 |
+
"has_age": true,
|
9 |
+
"has_gender": true,
|
10 |
+
"sample_size": 143
|
11 |
+
},
|
12 |
+
"GSE87005": {
|
13 |
+
"is_usable": true,
|
14 |
+
"is_gene_available": true,
|
15 |
+
"is_trait_available": true,
|
16 |
+
"is_available": true,
|
17 |
+
"is_biased": false,
|
18 |
+
"has_age": true,
|
19 |
+
"has_gender": true,
|
20 |
+
"sample_size": 40
|
21 |
+
},
|
22 |
+
"GSE83500": {
|
23 |
+
"is_usable": false,
|
24 |
+
"is_gene_available": true,
|
25 |
+
"is_trait_available": true,
|
26 |
+
"is_available": true,
|
27 |
+
"is_biased": true,
|
28 |
+
"has_age": true,
|
29 |
+
"has_gender": true,
|
30 |
+
"sample_size": 37
|
31 |
+
},
|
32 |
+
"GSE57691": {
|
33 |
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"is_usable": true,
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1 |
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GSM853700,GSM853701,GSM853702,GSM853703,GSM853704,GSM853705,GSM853706,GSM853707,GSM853708,GSM853709,GSM853710,GSM853711,GSM853712,GSM853713,GSM853714,GSM853715,GSM853716,GSM853717,GSM853718,GSM853719,GSM853720,GSM853721,GSM853722,GSM853723,GSM853724,GSM853725,GSM853726,GSM853727,GSM853728,GSM853729,GSM853730,GSM853731,GSM853732,GSM853733,GSM853734,GSM853735,GSM853736,GSM853737,GSM853738,GSM853739,GSM853740,GSM853741,GSM853742,GSM853743,GSM853744,GSM853745,GSM853746,GSM853747,GSM853748,GSM853749,GSM853750,GSM853751,GSM853752,GSM853753,GSM853754,GSM853755,GSM853756,GSM853757,GSM853758,GSM853759,GSM853760,GSM853761,GSM853762,GSM853763,GSM853764,GSM853765,GSM853766,GSM853767,GSM853768,GSM853769,GSM853770,GSM853771,GSM853772,GSM853773,GSM853774,GSM853775,GSM853776,GSM853777,GSM853778,GSM853779,GSM853780,GSM853781,GSM853782,GSM853783,GSM853784,GSM853785,GSM853786,GSM853787,GSM853788,GSM853789,GSM853790,GSM853791,GSM853792,GSM853793,GSM853794,GSM853795,GSM853796,GSM853797,GSM853798,GSM853799,GSM853800,GSM853801,GSM853802,GSM853803,GSM853804,GSM853805,GSM853806,GSM853807,GSM853808,GSM853809,GSM853810,GSM853811,GSM853812,GSM853813,GSM853814,GSM853815,GSM853816,GSM853817,GSM853818,GSM853819,GSM853820,GSM853821,GSM853822,GSM853823,GSM853824,GSM853825,GSM853826,GSM853827,GSM853828,GSM853829,GSM853830,GSM853831,GSM853832,GSM853833,GSM853834,GSM853835,GSM853836,GSM853837,GSM853838,GSM853839,GSM853840,GSM853841,GSM853842,GSM853843,GSM853844,GSM853845,GSM853846,GSM853847,GSM853848,GSM853849,GSM853850,GSM853851,GSM853852,GSM853853,GSM853854,GSM853855,GSM853856,GSM853857,GSM853858,GSM853859,GSM853860,GSM853861,GSM853862,GSM853863,GSM853864,GSM853865,GSM853866,GSM853867,GSM853868,GSM853869,GSM853870,GSM853871,GSM853872,GSM853873,GSM853874,GSM853875,GSM853876,GSM853877,GSM853878,GSM853879,GSM853880,GSM853881,GSM853882,GSM853883,GSM853884,GSM853885,GSM853886,GSM853887,GSM853888,GSM853889,GSM853890,GSM853891,GSM853892,GSM853893,GSM853894,GSM853895,GSM853896,GSM853897,GSM853898,GSM853899,GSM853900,GSM853901,GSM853902,GSM853903,GSM853904,GSM853905,GSM853906,GSM853907,GSM853908,GSM853909,GSM853910,GSM853911,GSM853912,GSM853913,GSM853914,GSM853915,GSM853916,GSM853917,GSM853918,GSM853919,GSM853920,GSM853921,GSM853922,GSM853923,GSM853924,GSM853925,GSM853926
|
2 |
+
1.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0
|
3 |
+
1.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,0.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,1.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0
|
output/preprocess/Huntingtons_Disease/clinical_data/GSE71220.csv
ADDED
@@ -0,0 +1 @@
|
|
|
|
|
1 |
+
,Huntingtons_Disease
|
output/preprocess/Huntingtons_Disease/clinical_data/TCGA.csv
ADDED
@@ -0,0 +1,703 @@
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|
1 |
+
,Huntingtons_Disease,Age,Gender
|
2 |
+
TCGA-06-0743-01,1,69.0,1.0
|
3 |
+
TCGA-26-5136-01,1,78.0,0.0
|
4 |
+
TCGA-HT-7857-01,1,24.0,0.0
|
5 |
+
TCGA-TQ-A7RW-01,1,32.0,1.0
|
6 |
+
TCGA-HT-7879-01,1,31.0,1.0
|
7 |
+
TCGA-HT-7609-01,1,34.0,1.0
|
8 |
+
TCGA-FG-5963-01,1,23.0,1.0
|
9 |
+
TCGA-TM-A7C3-01,1,43.0,0.0
|
10 |
+
TCGA-FG-A710-01,1,50.0,0.0
|
11 |
+
TCGA-FG-6691-01,1,23.0,0.0
|
12 |
+
TCGA-32-2634-01,1,82.0,1.0
|
13 |
+
TCGA-TQ-A7RM-01,1,41.0,0.0
|
14 |
+
TCGA-HW-7486-01,1,37.0,1.0
|
15 |
+
TCGA-06-0882-01,1,30.0,1.0
|
16 |
+
TCGA-FG-8186-01,1,42.0,0.0
|
17 |
+
TCGA-HT-A4DS-01,1,55.0,0.0
|
18 |
+
TCGA-06-0219-01,1,67.0,1.0
|
19 |
+
TCGA-FG-A60J-01,1,47.0,0.0
|
20 |
+
TCGA-HT-7858-01,1,28.0,1.0
|
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output/preprocess/Huntingtons_Disease/gene_data/GSE135589.csv
ADDED
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version https://git-lfs.github.com/spec/v1
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oid sha256:e3609aa381c92faefa343048d1d9314501e06999062666c9ceb9ea386db9dcdf
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output/preprocess/Huntingtons_Disease/gene_data/GSE154141.csv
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version https://git-lfs.github.com/spec/v1
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oid sha256:7acdcd8542d9af5bad0d08013005d1689fbb9c5710af418dbd7d82cb68c3f91b
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size 11955292
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output/preprocess/Huntingtons_Disease/gene_data/GSE154141_mapping_issue.txt
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Dataset: GSE154141
|
2 |
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Issue: Unable to map probe IDs to gene symbols
|
3 |
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Probe ID format in expression data: e.g., 16650001
|
4 |
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Probe ID format in annotation: e.g., 1415670_at
|
5 |
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Resolution: Gene expression data saved at probe level without gene symbol mapping.
|
6 |
+
Further analysis required to obtain the correct mapping for this platform.
|
output/preprocess/Huntingtons_Disease/gene_data/GSE26927.csv
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version https://git-lfs.github.com/spec/v1
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size 15651482
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version https://git-lfs.github.com/spec/v1
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version https://git-lfs.github.com/spec/v1
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output/preprocess/Huntingtons_Disease/gene_data/GSE95843.csv
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version https://git-lfs.github.com/spec/v1
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size 21229925
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output/preprocess/Hutchinson-Gilford_Progeria_Syndrome/clinical_data/GSE84351.csv
ADDED
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,Sample_1,Sample_2,Sample_3,Sample_4,Sample_5,Sample_6,Sample_7
|
2 |
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Hutchinson-Gilford_Progeria_Syndrome,1.0,0.0,,,,,
|
3 |
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Gender,1.0,0.0,,,,,
|
output/preprocess/Hutchinson-Gilford_Progeria_Syndrome/clinical_data/GSE84360.csv
ADDED
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|
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1 |
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,GSM2232606,GSM2232607,GSM2232608,GSM2232609,GSM2232610,GSM2232611,GSM2232612,GSM2232613,GSM2232614,GSM2232615,GSM2232616,GSM2232617,GSM2232618,GSM2232619,GSM2232620,GSM2232621,GSM2232622,GSM2232623,GSM2232624,GSM2232625,GSM2232626,GSM2232627,GSM2232628,GSM2232629,GSM2232630,GSM2232631,GSM2232632,GSM2232633,GSM2232634,GSM2232635,GSM2232636,GSM2232637,GSM2232638,GSM2232639,GSM2232640,GSM2232641,GSM2232642,GSM2232643,GSM2232644,GSM2232645,GSM2232646,GSM2232647,GSM2232648,GSM2232649,GSM2232650,GSM2232651,GSM2232652,GSM2232653,GSM2232654,GSM2232655,GSM2232656,GSM2232657,GSM2232658,GSM2232659
|
2 |
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Hutchinson-Gilford_Progeria_Syndrome,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
|
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Gender,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,,
|
output/preprocess/Hutchinson-Gilford_Progeria_Syndrome/cohort_info.json
ADDED
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{
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