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  1. .gitattributes +53 -0
  2. output/preprocess/Atherosclerosis/GSE109048.csv +3 -0
  3. output/preprocess/Atherosclerosis/GSE57691.csv +3 -0
  4. output/preprocess/Atherosclerosis/GSE87005.csv +0 -0
  5. output/preprocess/Atherosclerosis/GSE90074.csv +3 -0
  6. output/preprocess/Atherosclerosis/gene_data/GSE109048.csv +3 -0
  7. output/preprocess/Atherosclerosis/gene_data/GSE123086.csv +3 -0
  8. output/preprocess/Atherosclerosis/gene_data/GSE125771.csv +3 -0
  9. output/preprocess/Atherosclerosis/gene_data/GSE154851.csv +3 -0
  10. output/preprocess/Atherosclerosis/gene_data/GSE57691.csv +3 -0
  11. output/preprocess/Atherosclerosis/gene_data/GSE83500.csv +0 -0
  12. output/preprocess/Atherosclerosis/gene_data/GSE87005.csv +0 -0
  13. output/preprocess/Atherosclerosis/gene_data/GSE90074.csv +3 -0
  14. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/GSE208662.csv +0 -0
  15. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/GSE212331.csv +3 -0
  16. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/GSE21359.csv +3 -0
  17. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/clinical_data/GSE162635.csv +2 -0
  18. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/clinical_data/GSE210272.csv +4 -0
  19. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/clinical_data/GSE212331.csv +4 -0
  20. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/clinical_data/GSE21359.csv +4 -0
  21. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/clinical_data/GSE32030.csv +2 -0
  22. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/clinical_data/GSE84046.csv +45 -0
  23. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/clinical_data/TCGA.csv +1130 -0
  24. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/cohort_info.json +112 -0
  25. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/gene_data/GSE162635.csv +3 -0
  26. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/gene_data/GSE175616.csv +0 -0
  27. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/gene_data/GSE208662.csv +0 -0
  28. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/gene_data/GSE210272.csv +1 -0
  29. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/gene_data/GSE212331.csv +3 -0
  30. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/gene_data/GSE21359.csv +3 -0
  31. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/gene_data/GSE32030.csv +3 -0
  32. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/gene_data/GSE64593.csv +0 -0
  33. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/gene_data/GSE64599.csv +0 -0
  34. output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/gene_data/GSE84046.csv +3 -0
  35. output/preprocess/Fibromyalgia/GSE67311.csv +3 -0
  36. output/preprocess/Fibromyalgia/clinical_data/GSE67311.csv +2 -0
  37. output/preprocess/Fibromyalgia/cohort_info.json +22 -0
  38. output/preprocess/Fibromyalgia/gene_data/GSE67311.csv +3 -0
  39. output/preprocess/Hepatitis/gene_data/TCGA.csv +3 -0
  40. output/preprocess/Huntingtons_Disease/gene_data/GSE71220.csv +3 -0
  41. output/preprocess/Hypertension/gene_data/GSE117261.csv +3 -0
  42. output/preprocess/Hypertension/gene_data/GSE256539.csv +3 -0
  43. output/preprocess/Hypertension/gene_data/GSE71994.csv +3 -0
  44. output/preprocess/Hypertension/gene_data/GSE77627.csv +3 -0
  45. output/preprocess/Hypertrophic_Cardiomyopathy/GSE36961.csv +3 -0
  46. output/preprocess/Hypertrophic_Cardiomyopathy/clinical_data/GSE36961.csv +4 -0
  47. output/preprocess/Hypertrophic_Cardiomyopathy/cohort_info.json +22 -0
  48. output/preprocess/Hypertrophic_Cardiomyopathy/gene_data/GSE36961.csv +3 -0
  49. output/preprocess/Hypothyroidism/clinical_data/GSE151158.csv +4 -0
  50. output/preprocess/Hypothyroidism/clinical_data/GSE224330.csv +4 -0
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+ Chronic_obstructive_pulmonary_disease_(COPD),1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
3
+ Age,57.6,61.0,66.3,71.5,63.4,50.3,60.3,60.3,66.6,57.0,68.9,59.2,66.9,51.9,63.7,67.2,62.3,59.1,66.2,56.6,65.1,63.3,61.3,71.4,60.4,73.2,67.8,71.2,62.7,71.5,72.4,68.8,71.8,57.8,72.8,66.2,71.0,67.2,66.2,65.0,73.9,59.8,64.1,63.4,71.9,61.8,74.6,54.2,73.3,64.3,67.8,61.3,69.8,70.7,73.0,68.4,56.0,58.8,68.7,54.7,58.4,75.2,69.6,72.8,69.4,66.7,63.0,57.4,64.3,73.8,58.5,73.3,65.8,52.4,73.2,66.2,68.7,64.3,72.9,56.2,54.2,66.4,66.1,61.4,70.8,61.4,68.9,73.3,67.4,55.1,63.7,67.3,60.8,66.3,55.4,72.3,70.8,71.9,65.6,60.6,60.4,70.3,53.5,71.7,61.2,71.0,60.8,56.9,60.0,62.6,67.8,62.7,64.8,59.8,64.7,64.6,69.2,59.6,56.6,72.4,71.1,69.0,64.0,61.5,62.6,57.3,64.8,68.3,70.3,70.6,65.8,65.4,64.0,70.0,68.7,58.8,57.3,73.0,63.8,66.3,63.8,66.8,62.9,66.8,61.5,62.6,50.9,64.3,70.9,57.3,61.8,58.5,62.8,66.1,67.2,67.5,62.9,65.3,61.4,58.2,66.9,62.1,73.3,77.2,69.1,72.3,73.1,67.9,56.2,61.4,51.9,67.6,60.3,70.5,72.5,57.1,50.8,58.8,70.6,62.3,64.8,60.6,59.7,60.8,54.5,71.3,69.9,63.4,47.9,64.7,66.4,60.8,58.1,61.6,69.3,65.1,56.6,74.1,49.3,66.2,75.6,66.8,67.5,68.2,57.3,73.2,62.1,62.0,73.1,62.8,66.2,62.3,61.2,68.8,64.9,58.5,62.9,62.3,61.8,69.9,65.4,55.7,60.2,75.0,69.9,60.8,65.8,62.7,60.8,65.9,56.1,64.8,58.9,67.3,65.3,72.5,61.0,57.4
4
+ Gender,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0
output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/clinical_data/GSE212331.csv ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ 0
2
+ 1.0
3
+ 75.0
4
+ 0.0
output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/clinical_data/GSE21359.csv ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ 0,1,2,3
2
+ ,,,0.0
3
+ 41.0,,,
4
+ ,1.0,,
output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/clinical_data/GSE32030.csv ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ 0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29
2
+ 1.0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/clinical_data/GSE84046.csv ADDED
@@ -0,0 +1,45 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ,Gender,Age
2
+ GSM2226420,1,62
3
+ GSM2226421,1,70
4
+ GSM2226422,1,62
5
+ GSM2226423,1,70
6
+ GSM2226424,0,59
7
+ GSM2226425,1,67
8
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9
+ GSM2226427,0,59
10
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11
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12
+ GSM2226430,1,71
13
+ GSM2226431,1,62
14
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15
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16
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17
+ GSM2226435,0,60
18
+ GSM2226436,1,70
19
+ GSM2226437,1,63
20
+ GSM2226438,1,70
21
+ GSM2226439,1,63
22
+ GSM2226440,1,61
23
+ GSM2226441,1,62
24
+ GSM2226442,0,70
25
+ GSM2226443,1,61
26
+ GSM2226444,1,62
27
+ GSM2226445,0,70
28
+ GSM2226446,1,59
29
+ GSM2226447,1,68
30
+ GSM2226448,0,60
31
+ GSM2226449,1,59
32
+ GSM2226450,1,68
33
+ GSM2226451,0,60
34
+ GSM2226452,1,60
35
+ GSM2226453,1,68
36
+ GSM2226454,0,67
37
+ GSM2226455,1,60
38
+ GSM2226456,1,68
39
+ GSM2226457,0,67
40
+ GSM2226458,0,62
41
+ GSM2226459,0,68
42
+ GSM2226460,1,61
43
+ GSM2226461,0,62
44
+ GSM2226462,0,68
45
+ GSM2226463,1,61
output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/clinical_data/TCGA.csv ADDED
@@ -0,0 +1,1130 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ,Chronic_obstructive_pulmonary_disease_(COPD),Age,Gender
2
+ TCGA-97-8179-01,1,72.0,1.0
3
+ TCGA-44-A47B-01,1,79.0,1.0
4
+ TCGA-86-8076-01,1,42.0,1.0
5
+ TCGA-37-4135-01,1,68.0,1.0
6
+ TCGA-05-4395-01,1,76.0,1.0
7
+ TCGA-56-8629-01,1,63.0,1.0
8
+ TCGA-62-A470-01,1,84.0,1.0
9
+ TCGA-55-8097-01,1,60.0,0.0
10
+ TCGA-MP-A4TA-01,1,75.0,0.0
11
+ TCGA-55-6982-11,0,79.0,0.0
12
+ TCGA-MP-A4T6-01,1,76.0,0.0
13
+ TCGA-91-8499-01,1,76.0,0.0
14
+ TCGA-22-5489-01,1,64.0,1.0
15
+ TCGA-85-8287-01,1,72.0,1.0
16
+ TCGA-55-1594-01,1,68.0,1.0
17
+ TCGA-38-4632-01,1,42.0,1.0
18
+ TCGA-90-7964-01,1,70.0,1.0
19
+ TCGA-49-AAR9-01,1,61.0,1.0
20
+ TCGA-77-A5GA-01,1,76.0,1.0
21
+ TCGA-05-4244-01,1,70.0,1.0
22
+ TCGA-97-A4M1-01,1,52.0,0.0
23
+ TCGA-O2-A52S-01,1,57.0,0.0
24
+ TCGA-77-8144-01,1,70.0,1.0
25
+ TCGA-22-5489-11,0,64.0,1.0
26
+ TCGA-55-6986-01,1,74.0,0.0
27
+ TCGA-50-7109-01,1,60.0,1.0
28
+ TCGA-66-2777-01,1,71.0,1.0
29
+ TCGA-77-A5FZ-01,1,64.0,1.0
30
+ TCGA-75-6203-01,1,66.36272727272727,0.0
31
+ TCGA-NC-A5HP-01,1,69.0,1.0
32
+ TCGA-22-5482-01,1,81.0,1.0
33
+ TCGA-44-2656-01,1,59.0,1.0
34
+ TCGA-86-8279-01,1,46.0,1.0
35
+ TCGA-66-2791-01,1,66.0,1.0
36
+ TCGA-L9-A743-01,1,56.0,1.0
37
+ TCGA-85-8072-01,1,60.0,1.0
38
+ TCGA-55-8089-01,1,56.0,1.0
39
+ TCGA-33-4538-01,1,66.0,1.0
40
+ TCGA-L9-A5IP-01,1,40.0,0.0
41
+ TCGA-05-4420-01,1,41.0,1.0
42
+ TCGA-NJ-A55O-01,1,56.0,0.0
43
+ TCGA-56-7579-01,1,61.0,1.0
44
+ TCGA-55-7284-01,1,74.0,1.0
45
+ TCGA-39-5016-01,1,44.0,1.0
46
+ TCGA-22-5478-11,0,79.0,1.0
47
+ TCGA-05-5423-01,1,65.0,1.0
48
+ TCGA-66-2795-01,1,68.0,1.0
49
+ TCGA-86-7701-01,1,66.0,1.0
50
+ TCGA-56-8201-01,1,74.0,1.0
51
+ TCGA-78-7159-01,1,60.0,0.0
52
+ TCGA-60-2711-01,1,64.0,0.0
53
+ TCGA-18-3421-01,1,65.0,1.0
54
+ TCGA-63-A5MN-01,1,78.0,0.0
55
+ TCGA-34-5929-01,1,78.0,0.0
56
+ TCGA-22-4594-01,1,60.0,0.0
57
+ TCGA-L4-A4E6-01,1,67.0,1.0
58
+ TCGA-77-6844-01,1,74.0,1.0
59
+ TCGA-56-8309-01,1,66.0,1.0
60
+ TCGA-91-6840-01,1,59.0,0.0
61
+ TCGA-43-8115-01,1,72.0,0.0
62
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