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Given the following text description, write Python code to implement the functionality described below step by step
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Description:
 Visualize Glass Brain
Step1:  1. Upload all statistical maps into the data folder
The data folder can be found in the same folder as this notebook. Just drag and drop your NIfTI file into the data folder and press the upload button.
2. Specify relevant visualization parameters
Step2:  3. Run the visualization script
Step3:  4. Look at your data
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Python Code:
%matplotlib inline
Explanation: Visualize Glass Brain
End of explanation
stats_file = '../test_data/ALL_N95_Mean_cope2_thresh_zstat1.nii.gz'
view =  'ortho'
colormap = 'RdBu_r'
threshold = '2.3'
black_bg
Explanation: 1. Upload all statistical maps into the data folder
The data folder can be found in the same folder as this notebook. Just drag and drop your NIfTI file into the data folder and press the upload button.
2. Specify relevant visualization parameters
End of explanation
%run ../scripts/mni_glass_brain.py --cbar --display_mode $view --cmap $colormap --thr_abs $threshold $stats_file
Explanation: 3. Run the visualization script
End of explanation
from IPython.display import Image, display
from glob import glob as gg
outputs = gg('../test_data/*ortho.png')
for o in outputs:
    a = Image(filename=o)
    display(a)
plotting.plot_glass_brain??
Explanation: 4. Look at your data
End of explanation
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