diff --git a/src/flake8/checker.py b/src/flake8/checker.py
index bfd3f4d..7130df3 100644
--- a/src/flake8/checker.py
+++ b/src/flake8/checker.py
@@ -424,13 +424,23 @@ class FileChecker:
             )
 
     @staticmethod
-    def _extract_syntax_information(exception):
-        token = ()
-        if len(exception.args) > 1:
+    def _extract_syntax_information(exception: Exception) -> Tuple[int, int]:
+        if (
+            len(exception.args) > 1
+            and exception.args[1]
+            and len(exception.args[1]) > 2
+        ):
             token = exception.args[1]
-            if token and len(token) > 2:
-                row, column = token[1:3]
+            row, column = token[1:3]
+        elif (
+            isinstance(exception, tokenize.TokenError)
+            and len(exception.args) == 2
+            and len(exception.args[1]) == 2
+        ):
+            token = ()
+            row, column = exception.args[1]
         else:
+            token = ()
             row, column = (1, 0)
 
         if column > 0 and token and isinstance(exception, SyntaxError):
@@ -463,14 +473,7 @@ class FileChecker:
     def run_ast_checks(self) -> None:
         """Run all checks expecting an abstract syntax tree."""
         assert self.processor is not None
-        try:
-            ast = self.processor.build_ast()
-        except (ValueError, SyntaxError, TypeError) as e:
-            row, column = self._extract_syntax_information(e)
-            self.report(
-                "E999", row, column, f"{type(e).__name__}: {e.args[0]}"
-            )
-            return
+        ast = self.processor.build_ast()
 
         for plugin in self.checks["ast_plugins"]:
             checker = self.run_check(plugin, tree=ast)
@@ -548,7 +551,6 @@ class FileChecker:
     def process_tokens(self):
         """Process tokens and trigger checks.
 
-        This can raise a :class:`flake8.exceptions.InvalidSyntax` exception.
         Instead of using this directly, you should use
         :meth:`flake8.checker.FileChecker.run_checks`.
         """
@@ -578,15 +580,13 @@ class FileChecker:
         """Run checks against the file."""
         assert self.processor is not None
         try:
-            self.process_tokens()
             self.run_ast_checks()
-        except exceptions.InvalidSyntax as exc:
-            self.report(
-                exc.error_code,
-                exc.line_number,
-                exc.column_number,
-                exc.error_message,
-            )
+            self.process_tokens()
+        except (SyntaxError, tokenize.TokenError) as e:
+            code = "E902" if isinstance(e, tokenize.TokenError) else "E999"
+            row, column = self._extract_syntax_information(e)
+            self.report(code, row, column, f"{type(e).__name__}: {e.args[0]}")
+            return
 
         logical_lines = self.processor.statistics["logical lines"]
         self.statistics["logical lines"] = logical_lines
diff --git a/src/flake8/exceptions.py b/src/flake8/exceptions.py
index 4b0ddd1..45db94d 100644
--- a/src/flake8/exceptions.py
+++ b/src/flake8/exceptions.py
@@ -33,23 +33,6 @@ class FailedToLoadPlugin(Flake8Exception):
         }
 
 
-class InvalidSyntax(Flake8Exception):
-    """Exception raised when tokenizing a file fails."""
-
-    def __init__(self, exception: Exception) -> None:
-        """Initialize our InvalidSyntax exception."""
-        self.original_exception = exception
-        self.error_message = f"{type(exception).__name__}: {exception.args[0]}"
-        self.error_code = "E902"
-        self.line_number = 1
-        self.column_number = 0
-        super().__init__(exception)
-
-    def __str__(self) -> str:
-        """Format our exception message."""
-        return self.error_message
-
-
 class PluginRequestedUnknownParameters(Flake8Exception):
     """The plugin requested unknown parameters."""
 
diff --git a/src/flake8/processor.py b/src/flake8/processor.py
index 86709c1..fdc47c6 100644
--- a/src/flake8/processor.py
+++ b/src/flake8/processor.py
@@ -13,7 +13,6 @@ from typing import Tuple
 
 import flake8
 from flake8 import defaults
-from flake8 import exceptions
 from flake8 import utils
 
 LOG = logging.getLogger(__name__)
@@ -125,20 +124,12 @@ class FileProcessor:
 
     @property
     def file_tokens(self) -> List[_Token]:
-        """Return the complete set of tokens for a file.
-
-        Accessing this attribute *may* raise an InvalidSyntax exception.
-
-        :raises: flake8.exceptions.InvalidSyntax
-        """
+        """Return the complete set of tokens for a file."""
         if self._file_tokens is None:
             line_iter = iter(self.lines)
-            try:
-                self._file_tokens = list(
-                    tokenize.generate_tokens(lambda: next(line_iter))
-                )
-            except (tokenize.TokenError, SyntaxError) as exc:
-                raise exceptions.InvalidSyntax(exception=exc)
+            self._file_tokens = list(
+                tokenize.generate_tokens(lambda: next(line_iter))
+            )
 
         return self._file_tokens
 
@@ -274,20 +265,12 @@ class FileProcessor:
         return arguments
 
     def generate_tokens(self) -> Generator[_Token, None, None]:
-        """Tokenize the file and yield the tokens.
-
-        :raises flake8.exceptions.InvalidSyntax:
-            If a :class:`tokenize.TokenError` is raised while generating
-            tokens.
-        """
-        try:
-            for token in tokenize.generate_tokens(self.next_line):
-                if token[2][0] > self.total_lines:
-                    break
-                self.tokens.append(token)
-                yield token
-        except (tokenize.TokenError, SyntaxError) as exc:
-            raise exceptions.InvalidSyntax(exception=exc)
+        """Tokenize the file and yield the tokens."""
+        for token in tokenize.generate_tokens(self.next_line):
+            if token[2][0] > self.total_lines:
+                break
+            self.tokens.append(token)
+            yield token
 
     def _noqa_line_range(self, min_line: int, max_line: int) -> Dict[int, str]:
         line_range = range(min_line, max_line + 1)
@@ -299,7 +282,7 @@ class FileProcessor:
         if self._noqa_line_mapping is None:
             try:
                 file_tokens = self.file_tokens
-            except exceptions.InvalidSyntax:
+            except (tokenize.TokenError, SyntaxError):
                 # if we failed to parse the file tokens, we'll always fail in
                 # the future, so set this so the code does not try again
                 self._noqa_line_mapping = {}

diff --git a/tests/integration/test_main.py b/tests/integration/test_main.py
index 45fe9de..5c99d3c 100644
--- a/tests/integration/test_main.py
+++ b/tests/integration/test_main.py
@@ -1,6 +1,7 @@
 """Integration tests for the main entrypoint of flake8."""
 import json
 import os
+import sys
 from unittest import mock
 
 import pytest
@@ -186,8 +187,15 @@ def test_tokenization_error_but_not_syntax_error(tmpdir, capsys):
         tmpdir.join("t.py").write("b'foo' \\\n")
         _call_main(["t.py"], retv=1)
 
+    if hasattr(sys, "pypy_version_info"):  # pragma: no cover (pypy)
+        expected = "t.py:2:1: E999 SyntaxError: end of file (EOF) in multi-line statement\n"  # noqa: E501
+    elif sys.version_info < (3, 8):  # pragma: no cover (<cp38)
+        expected = "t.py:2:1: E902 TokenError: EOF in multi-line statement\n"
+    else:  # pragma: no cover (cp38+)
+        expected = "t.py:1:8: E999 SyntaxError: unexpected EOF while parsing\n"
+
     out, err = capsys.readouterr()
-    assert out == "t.py:1:1: E902 TokenError: EOF in multi-line statement\n"
+    assert out == expected
     assert err == ""
 
 
@@ -197,8 +205,12 @@ def test_tokenization_error_is_a_syntax_error(tmpdir, capsys):
         tmpdir.join("t.py").write("if True:\n    pass\n pass\n")
         _call_main(["t.py"], retv=1)
 
+    if hasattr(sys, "pypy_version_info"):  # pragma: no cover (pypy)
+        expected = "t.py:3:2: E999 IndentationError: unindent does not match any outer indentation level\n"  # noqa: E501
+    else:  # pragma: no cover (cpython)
+        expected = "t.py:3:5: E999 IndentationError: unindent does not match any outer indentation level\n"  # noqa: E501
+
     out, err = capsys.readouterr()
-    expected = "t.py:1:1: E902 IndentationError: unindent does not match any outer indentation level\n"  # noqa: E501
     assert out == expected
     assert err == ""
 
diff --git a/tests/unit/test_exceptions.py b/tests/unit/test_exceptions.py
index e9be495..6be1ebd 100644
--- a/tests/unit/test_exceptions.py
+++ b/tests/unit/test_exceptions.py
@@ -13,7 +13,6 @@ from flake8 import exceptions
             plugin_name="plugin_name",
             exception=ValueError("boom!"),
         ),
-        exceptions.InvalidSyntax(exception=ValueError("Unexpected token: $")),
         exceptions.PluginRequestedUnknownParameters(
             plugin={"plugin_name": "plugin_name"},
             exception=ValueError("boom!"),
diff --git a/tests/unit/test_file_checker.py b/tests/unit/test_file_checker.py
index f433ea6..bcc8b32 100644
--- a/tests/unit/test_file_checker.py
+++ b/tests/unit/test_file_checker.py
@@ -7,30 +7,6 @@ import flake8
 from flake8 import checker
 
 
-@mock.patch("flake8.processor.FileProcessor")
-def test_run_ast_checks_handles_SyntaxErrors(FileProcessor):  # noqa: N802,N803
-    """Stress our SyntaxError handling.
-
-    Related to: https://github.com/pycqa/flake8/issues/169
-    """
-    processor = mock.Mock(lines=[])
-    FileProcessor.return_value = processor
-    processor.build_ast.side_effect = SyntaxError(
-        "Failed to build ast", ("", 1, 5, "foo(\n")
-    )
-    file_checker = checker.FileChecker(__file__, checks={}, options=object())
-
-    with mock.patch.object(file_checker, "report") as report:
-        file_checker.run_ast_checks()
-
-        report.assert_called_once_with(
-            "E999",
-            1,
-            3,
-            "SyntaxError: Failed to build ast",
-        )
-
-
 @mock.patch("flake8.checker.FileChecker._make_processor", return_value=None)
 def test_repr(*args):
     """Verify we generate a correct repr."""

Wrong location reported for syntax errors
In GitLab by @scascketta on May 21, 2020, 14:14

*Please describe how you installed Flake8*

```
$ python3.8 -m venv .venv
$ source .venv/bin/activate
(.venv) $ pip install flake8
```

*Please provide the exact, unmodified output of `flake8 --bug-report`*
```
{
  "dependencies": [],
  "platform": {
    "python_implementation": "CPython",
    "python_version": "3.8.1",
    "system": "Darwin"
  },
  "plugins": [
    {
      "is_local": false,
      "plugin": "mccabe",
      "version": "0.6.1"
    },
    {
      "is_local": false,
      "plugin": "pycodestyle",
      "version": "2.6.0"
    },
    {
      "is_local": false,
      "plugin": "pyflakes",
      "version": "2.2.0"
    }
  ],
  "version": "3.8.1"
}
```
*Please describe the problem or feature*

Running flake8 on a Python module with a syntax error produces the E902 TokenError with the wrong line and column reported.

*If this is a bug report, please explain with examples (and example code) what you expected to happen and what actually happened.*

The contents of the test file with invalid syntax:
```
(.venv) $ cat blah.py
print("hello, world")
)
```

Python reports the correct location of the syntax error:
```
(.venv) $ python3.8 blah.py
  File "blah.py", line 2
    )
    ^
SyntaxError: unmatched ')'
```

Running flake8 on it reports the wrong line and column of the syntax error:
```
(.venv) $ flake8 blah.py
blah.py:1:1: E902 TokenError: EOF in multi-line statement
```

Thank you for reading!
tests/integration/test_main.py::test_tokenization_error_but_not_syntax_error tests/integration/test_main.py::test_tokenization_error_is_a_syntax_error
tests/integration/test_main.py::test_diff_option tests/integration/test_main.py::test_form_feed_line_split tests/integration/test_main.py::test_e101_indent_char_does_not_reset tests/integration/test_main.py::test_statistics_option tests/integration/test_main.py::test_show_source_option tests/integration/test_main.py::test_extend_exclude tests/integration/test_main.py::test_malformed_per_file_ignores_error tests/integration/test_main.py::test_bug_report_successful tests/integration/test_main.py::test_specific_noqa_does_not_clobber_pycodestyle_noqa tests/integration/test_main.py::test_specific_noqa_on_line_with_continuation tests/integration/test_main.py::test_physical_line_file_not_ending_in_newline tests/integration/test_main.py::test_physical_line_file_not_ending_in_newline_trailing_ws tests/integration/test_main.py::test_obtaining_args_from_sys_argv_when_not_explicity_provided tests/integration/test_main.py::test_cli_config_option_respected tests/integration/test_main.py::test_cli_isolated_overrides_config_option tests/integration/test_main.py::test_file_not_found tests/integration/test_main.py::test_output_file tests/unit/test_exceptions.py::test_pickleable[err0] tests/unit/test_exceptions.py::test_pickleable[err1] tests/unit/test_exceptions.py::test_pickleable[err2] tests/unit/test_file_checker.py::test_repr tests/unit/test_file_checker.py::test_nonexistent_file tests/unit/test_file_checker.py::test_raises_exception_on_failed_plugin