popV/tabula_muris_All_10x

Popular Vote (popV) model for automated cell type annotation of single-cell RNA-seq data. We provide here pretrained models for plug-in use in your own analysis. Follow our tutorial to learn how to use the model for cell type annotation.

Model description

Ageing is characterized by a progressive loss of physiological integrity, leading to impaired function and increased vulnerability to death. Despite rapid advances over recent years, many of the molecular and cellular processes that underlie the progressive loss of healthy physiology are poorly understood. To gain a better insight into these processes, here we generate a single-cell transcriptomic atlas across the lifespan of Mus musculus that includes data from 23 tissues and organs. We found cell-specific changes occurring across multiple cell types and organs, as well as age-related changes in the cellular composition of different organs. Using single-cell transcriptomic data, we assessed cell-type-specific manifestations of different hallmarks of ageing—such as senescence, genomic instability and changes in the immune system. This transcriptomic atlas—which we denote Tabula Muris Senis, or ‘Mouse Ageing Cell Atlas’—provides molecular information about how the most important hallmarks of ageing are reflected in a broad range of tissues and cell types.

Link to CELLxGENE: Link to the data in the CELLxGENE browser for interactive exploration of the data and download of the source data.

Training Code URL: Not provided by uploader.

Metrics

We provide here accuracies for each of the experts and the ensemble model. The validation set accuracies are computed on a 10% random subset of the data that was not used for training.

Cell Type	N cells	celltypist	knn bbknn	knn harmony	knn on scvi	onclass	scanvi	svm	xgboost	Consensus Prediction
B cell	3048	0.93	0.92	0.88	0.91	0.00	0.84	0.87	0.86	0.94
mesenchymal stem cell	1507	0.91	0.82	0.94	0.88	0.00	0.74	0.95	0.91	0.96
granulocyte	1272	0.88	0.89	0.82	0.84	0.00	0.88	0.80	0.87	0.91
basal cell of epidermis	1136	0.88	0.90	0.89	0.92	0.00	0.86	0.89	0.85	0.95
T cell	1146	0.83	0.81	0.77	0.73	0.00	0.74	0.72	0.77	0.88
keratinocyte	1122	0.88	0.85	0.92	0.93	0.00	0.82	0.91	0.88	0.96
endothelial cell	1031	0.91	0.89	0.84	0.87	0.00	0.83	0.97	0.92	0.96
classical monocyte	793	0.87	0.55	0.77	0.66	0.00	0.59	0.84	0.84	0.93
granulocytopoietic cell	777	0.79	0.78	0.81	0.78	0.00	0.78	0.77	0.80	0.85
macrophage	731	0.71	0.63	0.66	0.65	0.00	0.61	0.70	0.71	0.79
bladder urothelial cell	534	0.99	1.00	0.96	0.96	0.00	0.91	1.00	0.99	1.00
proerythroblast	449	0.67	0.71	0.64	0.62	0.00	0.66	0.64	0.69	0.79
kidney proximal convoluted tubule epithelial cell	419	0.84	0.85	0.78	0.84	0.00	0.86	0.87	0.85	0.88
endothelial cell of coronary artery	334	0.85	0.86	0.69	0.77	0.00	0.82	0.97	0.90	0.96
epithelial cell of proximal tubule	300	0.83	0.82	0.69	0.77	0.00	0.82	0.87	0.83	0.85
bladder cell	311	0.98	0.97	0.94	0.86	0.00	0.77	0.99	0.97	0.99
mature NK T cell	289	0.69	0.70	0.55	0.46	0.00	0.65	0.65	0.68	0.75
erythroblast	275	0.69	0.69	0.70	0.64	0.00	0.69	0.68	0.69	0.76
hepatocyte	289	1.00	0.99	0.99	0.98	0.00	0.99	1.00	0.98	1.00
promonocyte	286	0.84	0.77	0.84	0.74	0.00	0.80	0.90	0.85	0.92
stromal cell	271	0.74	0.29	0.90	0.63	0.00	0.60	0.94	0.80	0.92
megakaryocyte-erythroid progenitor cell	267	0.64	0.65	0.54	0.66	0.00	0.68	0.65	0.68	0.72
type B pancreatic cell	270	0.92	0.90	0.73	0.97	0.00	0.98	0.99	0.99	0.99
Kupffer cell	265	0.97	0.51	0.76	0.78	0.00	0.80	0.98	0.95	0.97
natural killer cell	277	0.91	0.90	0.77	0.85	0.00	0.83	0.90	0.90	0.93
professional antigen presenting cell	278	0.07	0.01	0.15	0.08	0.00	0.09	0.54	0.46	0.07
fibroblast of cardiac tissue	247	0.98	0.98	0.90	0.79	0.00	0.69	0.98	0.95	0.98
monocyte	258	0.74	0.51	0.77	0.48	0.00	0.53	0.91	0.85	0.90
bronchial smooth muscle cell	221	0.96	0.97	0.87	0.92	0.00	0.95	0.98	0.96	0.98
hematopoietic precursor cell	200	0.59	0.72	0.50	0.60	0.00	0.62	0.77	0.79	0.81
pancreatic acinar cell	234	0.99	0.99	0.51	0.99	0.00	0.99	1.00	1.00	1.00
skeletal muscle satellite cell	184	0.99	0.99	0.99	0.97	0.00	0.97	0.99	0.97	0.99
DN4 thymocyte	190	0.26	0.03	0.46	0.20	0.00	0.10	0.59	0.59	0.40
luminal epithelial cell of mammary gland	190	0.93	0.91	0.93	0.92	0.00	0.87	0.99	0.95	0.97
mesenchymal stem cell of adipose tissue	175	0.69	0.43	0.62	0.62	0.00	0.40	0.90	0.76	0.92
thymocyte	175	0.97	0.15	0.89	0.94	0.00	0.92	0.99	0.97	0.99
myeloid cell	228	0.58	0.10	0.51	0.54	0.00	0.13	0.86	0.80	0.76
fibroblast	171	0.68	0.13	0.69	0.66	0.00	0.65	0.73	0.70	0.82
immature T cell	169	0.92	0.69	0.85	0.95	0.00	0.93	0.95	0.93	0.95
intermediate monocyte	178	0.68	0.29	0.62	0.49	0.00	0.67	0.59	0.57	0.78
epidermal cell	177	0.94	0.00	0.88	0.92	0.00	0.92	0.92	0.89	0.95
chondrocyte	175	0.86	0.00	0.85	0.84	0.00	0.76	0.89	0.87	0.91
plasma cell	149	0.56	0.65	0.65	0.59	0.00	0.60	0.62	0.62	0.73
smooth muscle cell	170	0.74	0.83	0.81	0.75	0.00	0.75	0.91	0.83	0.83
lymphocyte	145	0.26	0.22	0.28	0.20	0.00	0.13	0.28	0.38	0.36
basal cell	156	0.98	0.98	0.97	0.97	0.00	0.95	0.99	0.97	0.98
naive T cell	152	0.84	0.89	0.89	0.89	0.00	0.85	0.86	0.89	0.91
kidney loop of Henle thick ascending limb epithelial cell	155	0.91	0.90	0.88	0.92	0.00	0.88	0.90	0.86	0.92
fibroblast of lung	155	0.98	0.91	0.97	0.98	0.00	0.92	0.99	0.97	0.99
leukocyte	150	0.68	0.60	0.55	0.41	0.00	0.40	0.74	0.77	0.74
alveolar macrophage	120	0.98	0.98	0.98	0.97	0.00	0.96	0.99	0.98	0.99
lung macrophage	122	0.89	0.05	0.59	0.53	0.00	0.91	0.91	0.84	0.94
enterocyte of epithelium of large intestine	102	0.96	0.66	0.90	0.92	0.00	0.87	0.98	0.96	0.98
non-classical monocyte	93	0.77	0.76	0.80	0.70	0.00	0.82	0.86	0.74	0.82
double negative thymocyte	82	0.75	0.02	0.38	0.69	0.00	0.84	0.86	0.77	0.85
precursor B cell	107	0.80	0.87	0.74	0.77	0.00	0.93	0.96	0.91	0.92
mesenchymal cell	89	0.28	0.00	0.15	0.15	0.00	0.07	0.48	0.55	0.41
CD8-positive, alpha-beta T cell	82	0.69	0.70	0.29	0.21	0.00	0.45	0.68	0.71	0.77
immature B cell	85	0.95	0.92	0.91	0.95	0.00	0.95	0.67	0.88	0.97
kidney collecting duct principal cell	67	0.93	0.98	0.92	0.94	0.00	0.80	0.95	0.96	0.97
kidney distal convoluted tubule epithelial cell	70	0.91	0.96	0.86	0.95	0.00	0.94	0.91	0.94	0.96
endocardial cell	58	0.90	0.94	0.91	0.88	0.00	0.79	0.90	0.81	0.94
endothelial cell of hepatic sinusoid	54	0.98	0.93	0.79	0.83	0.00	0.83	0.93	0.94	0.94
neutrophil	61	0.65	0.64	0.67	0.67	0.00	0.91	0.85	0.82	0.85
CD4-positive, alpha-beta T cell	49	0.00	0.31	0.12	0.14	0.00	0.31	0.39	0.42	0.53
late pro-B cell	58	0.75	0.80	0.38	0.56	0.00	0.78	0.76	0.80	0.87
adventitial cell	44	0.74	0.53	0.79	0.46	0.00	0.46	0.84	0.62	0.85
basal epithelial cell of tracheobronchial tree	46	0.97	0.00	0.93	0.68	0.00	0.84	0.96	0.91	0.99
plasmatocyte	40	0.89	0.80	0.56	0.89	0.00	0.65	0.94	0.87	0.92
keratinocyte stem cell	41	0.82	0.00	0.74	0.91	0.00	0.71	0.91	0.78	0.89
brush cell	33	0.91	0.83	0.68	0.90	0.00	0.82	0.79	0.81	0.92
erythroid progenitor cell, mammalian	41	0.67	0.00	0.09	0.45	0.00	0.28	0.78	0.55	0.87
naive B cell	36	0.93	0.93	0.89	0.86	0.00	0.70	0.92	0.94	0.92
kidney cortex artery cell	41	0.77	0.87	0.43	0.78	0.00	0.41	0.82	0.72	0.85
erythrocyte	29	0.69	0.43	0.69	0.70	0.00	0.43	0.79	0.72	0.79
intestinal crypt stem cell	25	0.53	0.08	0.12	0.68	0.00	0.73	0.86	0.86	0.89
epithelial cell	39	0.71	0.11	0.78	0.75	0.00	0.77	0.94	0.78	0.87
pancreatic ductal cell	29	1.00	0.56	0.81	0.87	0.00	0.78	0.91	0.93	0.88
cardiac muscle cell	31	0.98	0.98	0.98	1.00	0.00	0.97	0.98	0.98	0.98
vein endothelial cell	33	0.77	0.81	0.60	0.81	0.00	0.87	0.91	0.82	0.89
pancreatic A cell	39	0.00	0.14	0.11	0.85	0.00	0.92	0.94	0.93	0.93
myeloid leukocyte	30	0.77	0.24	0.46	0.00	0.00	0.16	0.79	0.81	0.89
Schwann cell	20	0.67	0.25	0.87	0.89	0.00	0.70	0.78	0.73	0.70
pancreatic D cell	24	0.26	0.56	0.33	0.94	0.00	0.92	0.86	0.96	0.94
mesangial cell	30	0.38	0.85	0.52	0.65	0.00	0.69	0.94	0.85	0.97
basophil	26	0.63	0.72	0.87	0.61	0.00	0.35	0.66	0.69	0.82
myeloid dendritic cell	37	0.44	0.71	0.26	0.53	0.00	0.26	0.77	0.72	0.89
epithelial cell of large intestine	26	0.00	0.00	0.37	0.78	0.00	0.54	0.85	0.86	0.89
pulmonary interstitial fibroblast	23	0.85	0.82	0.78	0.94	0.00	0.61	0.92	0.92	0.98
kidney loop of Henle ascending limb epithelial cell	24	0.00	0.12	0.28	0.08	0.00	0.56	0.44	0.41	0.31
cell of skeletal muscle	14	1.00	1.00	0.96	1.00	0.00	0.93	0.97	0.97	1.00
Langerhans cell	14	1.00	0.75	0.00	0.53	0.00	0.43	0.87	0.82	1.00
stem cell of epidermis	8	0.48	0.00	0.88	0.82	0.00	0.18	0.62	0.61	0.80
kidney capillary endothelial cell	18	0.31	0.44	0.55	0.48	0.00	0.30	0.32	0.32	0.33
large intestine goblet cell	20	0.00	0.00	0.52	0.89	0.00	0.97	1.00	0.95	0.98
pancreatic PP cell	14	0.00	0.00	0.00	0.82	0.00	0.76	0.81	0.89	0.96
macrophage dendritic cell progenitor	24	0.00	0.52	0.24	0.36	0.00	0.85	0.67	0.62	0.77
DN3 thymocyte	16	0.97	0.61	0.00	0.97	0.00	0.65	0.84	0.83	0.97
smooth muscle cell of trachea	13	0.00	0.00	0.63	0.24	0.00	0.00	0.75	0.52	0.14
regulatory T cell	8	0.00	0.00	0.00	0.10	0.00	0.07	0.21	0.07	0.00
plasmacytoid dendritic cell	15	0.42	0.48	0.18	0.26	0.00	0.55	0.62	0.46	0.73
smooth muscle cell of the pulmonary artery	6	0.00	0.91	0.80	0.67	0.00	0.71	0.86	0.91	0.91
kidney proximal straight tubule epithelial cell	9	0.00	0.00	0.00	0.00	0.00	0.00	0.24	0.19	0.00
blood cell	5	0.11	0.00	0.00	0.00	0.00	0.00	0.18	0.11	0.15
immature NK T cell	6	0.33	0.25	0.44	0.25	0.00	0.27	0.48	0.34	0.50
cardiac neuron	7	0.00	0.22	0.55	0.30	0.00	0.33	0.48	0.48	0.40
mast cell	4	0.33	0.00	0.17	0.00	0.00	0.20	0.75	0.55	0.60
pericyte	5	1.00	0.91	0.91	1.00	0.00	0.62	0.67	0.91	1.00
ciliated columnar cell of tracheobronchial tree	3	1.00	0.03	0.60	0.75	0.00	0.60	0.11	1.00	0.86
neuroendocrine cell	5	0.00	0.00	0.44	0.22	0.00	0.00	0.00	0.00	0.00
dendritic cell	8	0.00	0.00	0.20	0.12	0.00	0.23	0.64	0.67	0.67
endothelial cell of lymphatic vessel	4	0.00	0.00	0.86	0.33	0.00	0.50	0.67	0.40	0.86
hepatic stellate cell	3	0.80	0.00	0.67	0.57	0.00	0.19	1.00	0.80	0.80
hematopoietic stem cell	5	0.55	0.00	0.00	0.00	0.00	0.22	0.60	0.80	0.57
kidney collecting duct epithelial cell	2	0.00	0.00	0.00	0.00	0.00	0.67	0.00	0.00	0.00
pancreatic stellate cell	1	0.00	0.00	0.00	0.00	0.00	0.04	0.00	0.67	1.00
club cell	1	0.14	0.00	0.00	0.18	0.00	0.22	0.00	0.13	0.14
lung neuroendocrine cell	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
kidney cell	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
duct epithelial cell	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00

The train accuracies are computed on the training data.

Cell Type	N cells	celltypist	knn bbknn	knn harmony	knn on scvi	onclass	scanvi	svm	xgboost	Consensus Prediction
B cell	27670	0.94	0.92	0.94	0.95	0.00	0.91	0.88	0.87	0.96
mesenchymal stem cell	13206	0.90	0.79	0.97	0.92	0.00	0.85	0.94	0.91	0.97
granulocyte	11324	0.87	0.88	0.94	0.93	0.00	0.91	0.79	0.87	0.93
basal cell of epidermis	10295	0.88	0.87	0.94	0.95	0.00	0.90	0.89	0.85	0.95
T cell	10270	0.82	0.77	0.82	0.88	0.00	0.91	0.75	0.79	0.92
keratinocyte	10020	0.88	0.82	0.95	0.96	0.00	0.89	0.91	0.87	0.95
endothelial cell	8863	0.91	0.86	0.89	0.92	0.00	0.91	0.97	0.92	0.97
classical monocyte	7129	0.87	0.47	0.85	0.91	0.00	0.92	0.85	0.86	0.95
granulocytopoietic cell	6822	0.81	0.75	0.93	0.91	0.00	0.84	0.80	0.83	0.90
macrophage	6453	0.70	0.63	0.84	0.82	0.00	0.84	0.73	0.74	0.89
bladder urothelial cell	4697	0.99	0.99	1.00	0.98	0.00	0.98	1.00	0.99	1.00
proerythroblast	4121	0.68	0.68	0.85	0.82	0.00	0.81	0.66	0.74	0.82
kidney proximal convoluted tubule epithelial cell	4041	0.86	0.82	0.89	0.90	0.00	0.89	0.91	0.89	0.92
endothelial cell of coronary artery	2959	0.86	0.80	0.81	0.88	0.00	0.94	0.97	0.91	0.98
epithelial cell of proximal tubule	2753	0.83	0.72	0.84	0.85	0.00	0.87	0.89	0.86	0.88
bladder cell	2692	0.97	0.96	0.99	0.91	0.00	0.95	0.99	0.96	0.99
mature NK T cell	2673	0.70	0.69	0.68	0.82	0.00	0.88	0.70	0.76	0.85
erythroblast	2643	0.72	0.72	0.84	0.87	0.00	0.87	0.75	0.79	0.85
hepatocyte	2627	1.00	1.00	0.99	1.00	0.00	1.00	1.00	0.99	1.00
promonocyte	2541	0.83	0.78	0.89	0.92	0.00	0.92	0.89	0.88	0.93
stromal cell	2512	0.73	0.01	0.97	0.75	0.00	0.81	0.94	0.82	0.94
megakaryocyte-erythroid progenitor cell	2445	0.72	0.74	0.83	0.86	0.00	0.87	0.73	0.77	0.85
type B pancreatic cell	2404	0.93	0.82	0.92	0.99	0.00	0.99	1.00	0.99	1.00
Kupffer cell	2281	0.98	0.40	0.84	0.90	0.00	0.98	0.99	0.97	0.99
natural killer cell	2207	0.86	0.84	0.76	0.89	0.00	0.91	0.90	0.90	0.93
professional antigen presenting cell	2204	0.06	0.00	0.32	0.39	0.00	0.60	0.55	0.46	0.50
fibroblast of cardiac tissue	2162	0.99	0.97	0.96	0.85	0.00	0.88	0.99	0.96	1.00
monocyte	2135	0.72	0.45	0.87	0.82	0.00	0.91	0.90	0.89	0.94
bronchial smooth muscle cell	2118	0.97	0.97	0.85	0.94	0.00	0.99	0.99	0.97	0.99
hematopoietic precursor cell	1944	0.61	0.68	0.67	0.83	0.00	0.88	0.81	0.84	0.89
pancreatic acinar cell	1905	0.99	0.99	0.91	1.00	0.00	1.00	1.00	1.00	1.00
skeletal muscle satellite cell	1871	0.98	0.98	0.99	0.98	0.00	0.98	0.99	0.97	0.99
DN4 thymocyte	1810	0.29	0.01	0.58	0.64	0.00	0.94	0.67	0.67	0.82
luminal epithelial cell of mammary gland	1713	0.92	0.87	0.98	0.95	0.00	0.94	0.98	0.97	0.99
mesenchymal stem cell of adipose tissue	1718	0.67	0.17	0.87	0.72	0.00	0.91	0.93	0.82	0.94
thymocyte	1717	0.98	0.02	0.93	0.98	0.00	0.96	0.99	0.97	0.99
myeloid cell	1643	0.60	0.03	0.73	0.70	0.00	0.94	0.89	0.83	0.93
fibroblast	1642	0.67	0.06	0.79	0.80	0.00	0.71	0.78	0.80	0.87
immature T cell	1615	0.92	0.21	0.94	0.98	0.00	0.96	0.97	0.95	0.98
intermediate monocyte	1571	0.65	0.23	0.70	0.78	0.00	0.74	0.63	0.63	0.81
epidermal cell	1558	0.93	0.00	0.95	0.94	0.00	0.94	0.91	0.91	0.96
chondrocyte	1455	0.85	0.00	0.88	0.89	0.00	0.86	0.91	0.91	0.93
plasma cell	1472	0.61	0.65	0.79	0.81	0.00	0.79	0.72	0.72	0.84
smooth muscle cell	1431	0.74	0.81	0.88	0.90	0.00	0.85	0.93	0.87	0.85
lymphocyte	1446	0.25	0.21	0.65	0.51	0.00	0.83	0.40	0.50	0.71
basal cell	1431	0.98	0.98	0.99	0.99	0.00	0.98	0.99	0.97	0.99
naive T cell	1416	0.85	0.90	0.94	0.93	0.00	0.89	0.90	0.90	0.92
kidney loop of Henle thick ascending limb epithelial cell	1399	0.93	0.93	0.94	0.94	0.00	0.90	0.97	0.96	0.96
fibroblast of lung	1368	0.95	0.92	0.95	0.97	0.00	0.97	0.99	0.98	0.99
leukocyte	1350	0.68	0.52	0.74	0.68	0.00	0.88	0.77	0.81	0.92
alveolar macrophage	1246	0.98	0.96	0.98	0.96	0.00	0.97	0.98	0.97	0.99
lung macrophage	1035	0.89	0.04	0.77	0.86	0.00	0.94	0.92	0.88	0.97
enterocyte of epithelium of large intestine	1023	0.95	0.00	0.95	0.95	0.00	0.98	1.00	0.99	1.00
non-classical monocyte	917	0.78	0.77	0.90	0.87	0.00	0.94	0.89	0.85	0.89
double negative thymocyte	889	0.72	0.00	0.65	0.88	0.00	0.91	0.91	0.86	0.94
precursor B cell	808	0.82	0.85	0.86	0.96	0.00	0.96	0.95	0.95	0.95
mesenchymal cell	790	0.22	0.00	0.44	0.34	0.00	0.35	0.56	0.61	0.59
CD8-positive, alpha-beta T cell	788	0.62	0.55	0.44	0.67	0.00	0.89	0.76	0.79	0.91
immature B cell	741	0.93	0.88	0.94	0.95	0.00	0.94	0.66	0.90	0.94
kidney collecting duct principal cell	722	0.91	0.94	0.96	0.96	0.00	0.89	0.99	0.97	0.97
kidney distal convoluted tubule epithelial cell	674	0.90	0.92	0.93	0.94	0.00	0.96	0.98	0.97	0.96
endocardial cell	620	0.88	0.90	0.93	0.92	0.00	0.86	0.93	0.85	0.97
endothelial cell of hepatic sinusoid	620	0.98	0.95	0.82	0.90	0.00	0.95	0.98	0.96	0.99
neutrophil	491	0.66	0.58	0.95	0.91	0.00	0.96	0.91	0.88	0.97
CD4-positive, alpha-beta T cell	502	0.00	0.28	0.51	0.60	0.00	0.86	0.58	0.62	0.89
late pro-B cell	474	0.71	0.74	0.66	0.83	0.00	0.92	0.88	0.88	0.96
adventitial cell	482	0.77	0.52	0.95	0.66	0.00	0.85	0.91	0.80	0.95
basal epithelial cell of tracheobronchial tree	475	0.96	0.00	0.98	0.87	0.00	0.93	0.98	0.96	0.99
plasmatocyte	456	0.88	0.80	0.93	0.88	0.00	0.76	0.95	0.94	0.96
keratinocyte stem cell	377	0.83	0.00	0.94	0.92	0.00	0.81	0.91	0.78	0.95
brush cell	381	0.92	0.81	0.95	0.94	0.00	0.92	0.90	0.91	0.96
erythroid progenitor cell, mammalian	368	0.65	0.00	0.93	0.77	0.00	0.42	0.84	0.60	0.90
naive B cell	362	0.87	0.89	0.94	0.94	0.00	0.88	0.97	0.97	0.97
kidney cortex artery cell	340	0.81	0.88	0.82	0.78	0.00	0.50	0.84	0.72	0.86
erythrocyte	327	0.78	0.47	0.85	0.90	0.00	0.74	0.87	0.85	0.90
intestinal crypt stem cell	314	0.68	0.00	0.87	0.88	0.00	0.96	0.99	1.00	1.00
epithelial cell	299	0.69	0.02	0.92	0.82	0.00	0.93	0.96	0.91	0.98
pancreatic ductal cell	306	0.99	0.57	0.96	0.91	0.00	0.89	0.99	0.98	0.99
cardiac muscle cell	303	1.00	1.00	1.00	0.99	0.00	1.00	1.00	1.00	1.00
vein endothelial cell	287	0.82	0.82	0.85	0.85	0.00	0.95	0.96	0.89	0.94
pancreatic A cell	270	0.00	0.00	0.68	0.93	0.00	0.96	0.99	0.98	0.99
myeloid leukocyte	276	0.74	0.04	0.89	0.52	0.00	0.86	0.86	0.87	0.98
Schwann cell	254	0.78	0.27	0.96	0.91	0.00	0.90	0.89	0.88	0.89
pancreatic D cell	247	0.36	0.37	0.85	0.97	0.00	0.94	0.93	0.99	0.98
mesangial cell	231	0.32	0.83	0.79	0.87	0.00	0.83	0.96	0.91	0.98
basophil	228	0.64	0.65	0.90	0.87	0.00	0.72	0.68	0.79	0.87
myeloid dendritic cell	208	0.40	0.66	0.86	0.62	0.00	0.79	0.80	0.79	0.92
epithelial cell of large intestine	203	0.00	0.00	0.73	0.78	0.00	0.68	0.99	0.95	0.98
pulmonary interstitial fibroblast	199	0.89	0.83	0.98	0.98	0.00	0.83	0.88	0.97	0.98
kidney loop of Henle ascending limb epithelial cell	177	0.00	0.26	0.40	0.17	0.00	0.60	0.86	0.81	0.56
cell of skeletal muscle	178	0.96	0.94	0.98	0.97	0.00	0.91	0.97	0.97	0.98
Langerhans cell	161	0.94	0.79	0.97	0.83	0.00	0.81	0.94	0.89	1.00
stem cell of epidermis	163	0.70	0.00	0.83	0.91	0.00	0.59	0.87	0.77	0.90
kidney capillary endothelial cell	143	0.23	0.48	0.42	0.45	0.00	0.28	0.27	0.30	0.28
large intestine goblet cell	138	0.00	0.00	0.92	0.93	0.00	0.98	1.00	1.00	1.00
pancreatic PP cell	143	0.00	0.00	0.72	0.88	0.00	0.95	0.97	0.99	0.98
macrophage dendritic cell progenitor	124	0.00	0.27	0.39	0.76	0.00	0.82	0.86	0.82	0.86
DN3 thymocyte	130	0.89	0.40	0.87	0.94	0.00	0.82	0.93	0.94	0.97
smooth muscle cell of trachea	114	0.00	0.00	0.48	0.57	0.00	0.49	0.92	0.89	0.87
regulatory T cell	115	0.00	0.05	0.14	0.36	0.00	0.41	0.57	0.44	0.70
plasmacytoid dendritic cell	101	0.47	0.28	0.49	0.78	0.00	0.79	0.88	0.81	0.93
smooth muscle cell of the pulmonary artery	92	0.00	0.63	0.88	0.82	0.00	0.76	0.96	0.85	0.94
kidney proximal straight tubule epithelial cell	86	0.00	0.00	0.13	0.00	0.00	0.49	0.52	0.41	0.66
blood cell	83	0.24	0.00	0.48	0.24	0.00	0.25	0.45	0.37	0.43
immature NK T cell	78	0.28	0.20	0.68	0.64	0.00	0.39	0.63	0.52	0.67
cardiac neuron	74	0.00	0.31	0.91	0.70	0.00	0.83	0.88	0.91	0.95
mast cell	72	0.07	0.00	0.88	0.82	0.00	0.87	0.88	0.82	0.96
pericyte	56	0.99	0.88	0.82	0.95	0.00	0.97	0.80	0.99	0.99
ciliated columnar cell of tracheobronchial tree	54	0.92	0.05	0.68	0.88	0.00	0.99	0.27	0.98	0.97
neuroendocrine cell	43	0.00	0.00	0.31	0.42	0.00	0.66	1.00	0.75	0.56
dendritic cell	37	0.00	0.10	0.67	0.45	0.00	0.28	0.57	0.73	0.99
endothelial cell of lymphatic vessel	37	0.00	0.39	0.93	0.78	0.00	0.77	0.76	0.50	0.99
hepatic stellate cell	36	0.89	0.20	0.88	0.92	0.00	0.38	0.99	1.00	0.99
hematopoietic stem cell	31	0.70	0.00	0.18	0.82	0.00	0.55	0.66	0.87	0.98
kidney collecting duct epithelial cell	23	0.00	0.00	0.08	0.00	0.00	0.90	0.98	1.00	0.16
pancreatic stellate cell	20	0.00	0.00	0.71	0.10	0.00	0.37	0.78	0.95	0.95
club cell	14	0.08	0.00	0.26	0.09	0.00	0.16	0.21	0.20	0.12
lung neuroendocrine cell	4	0.00	0.00	1.00	1.00	0.00	0.89	0.09	0.80	1.00
kidney cell	3	0.00	0.00	0.00	0.00	0.00	0.16	0.03	1.00	0.50
duct epithelial cell	2	0.00	0.00	0.00	0.00	0.00	0.80	1.00	0.57	0.67

References

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