results / README.md
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Fine-tuned BioGPT on ncbi-disease for BIO NER
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metadata
library_name: transformers
license: mit
base_model: microsoft/biogpt
tags:
  - generated_from_trainer
datasets:
  - ncbi_disease
metrics:
  - precision
  - recall
  - f1
  - accuracy
model-index:
  - name: results
    results:
      - task:
          name: Token Classification
          type: token-classification
        dataset:
          name: ncbi_disease
          type: ncbi_disease
          config: ncbi_disease
          split: validation
          args: ncbi_disease
        metrics:
          - name: Precision
            type: precision
            value: 0.47419354838709676
          - name: Recall
            type: recall
            value: 0.5603557814485387
          - name: F1
            type: f1
            value: 0.5136866627839255
          - name: Accuracy
            type: accuracy
            value: 0.9606157954023947

results

This model is a fine-tuned version of microsoft/biogpt on the ncbi_disease dataset. It achieves the following results on the evaluation set:

  • Loss: 0.1379
  • Precision: 0.4742
  • Recall: 0.5604
  • F1: 0.5137
  • Accuracy: 0.9606

Model description

More information needed

Intended uses & limitations

More information needed

Training and evaluation data

More information needed

Training procedure

Training hyperparameters

The following hyperparameters were used during training:

  • learning_rate: 2e-05
  • train_batch_size: 8
  • eval_batch_size: 8
  • seed: 42
  • optimizer: Use OptimizerNames.ADAMW_TORCH with betas=(0.9,0.999) and epsilon=1e-08 and optimizer_args=No additional optimizer arguments
  • lr_scheduler_type: linear
  • num_epochs: 3

Training results

Framework versions

  • Transformers 4.51.2
  • Pytorch 2.6.0+cu124
  • Datasets 3.5.0
  • Tokenizers 0.21.1