Dataset Viewer
Common name
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48
| Scientific name
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32
| Taxon ID
int64 6.24k
2.72M
| Ensembl Assembly
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37
| Accession
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16
| Genebuild Method
stringclasses 5
values | Variation database
stringclasses 2
values | Regulation database
stringclasses 2
values |
|---|---|---|---|---|---|---|---|
Abingdon island giant tortoise | Chelonoidis abingdonii | 106,734 | ASM359739v1 | GCA_003597395.1 | Full genebuild | - | - |
African ostrich | Struthio camelus australis | 441,894 | ASM69896v1 | GCA_000698965.1 | Full genebuild | - | - |
Agassiz's desert tortoise | Gopherus agassizii | 38,772 | ASM289641v1 | GCA_002896415.1 | Full genebuild | - | - |
Algerian mouse | Mus spretus | 10,096 | SPRET_EiJ_v1 | GCA_001624865.1 | External annotation import | - | Y |
Alpaca | Vicugna pacos | 30,538 | vicPac1 | - | Projection build | - | - |
Alpine marmot | Marmota marmota marmota | 9,994 | marMar2.1 | GCA_001458135.1 | Full genebuild | - | - |
Amazon molly | Poecilia formosa | 48,698 | Poecilia_formosa-5.1.2 | GCA_000485575.1 | Full genebuild | - | - |
American beaver | Castor canadensis | 51,338 | C.can_genome_v1.0 | GCA_001984765.1 | Full genebuild | - | - |
American bison | Bison bison bison | 43,346 | Bison_UMD1.0 | GCA_000754665.1 | Full genebuild | Y | - |
American black bear | Ursus americanus | 9,643 | ASM334442v1 | GCA_003344425.1 | Full genebuild | - | - |
American mink | Neovison vison | 452,646 | NNQGG.v01 | GCA_900108605.1 | Full genebuild | Y | - |
Angola colobus | Colobus angolensis palliatus | 336,983 | Cang.pa_1.0 | GCA_000951035.1 | Full genebuild | - | Y |
Arabian camel | Camelus dromedarius | 9,838 | CamDro2 | GCA_000803125.2 | Full genebuild | - | - |
Arctic ground squirrel | Urocitellus parryii | 9,999 | ASM342692v1 | GCA_003426925.1 | Full genebuild | - | - |
Argentine black and white tegu | Salvator merianae | 96,440 | HLtupMer3 | GCA_003586115.1 | Full genebuild | - | - |
Armadillo | Dasypus novemcinctus | 9,361 | Dasnov3.0 | GCA_000208655.2 | Mixed strategy build | - | - |
Asian bonytongue | Scleropages formosus | 113,540 | fSclFor1.1 | GCA_900964775.1 | Full genebuild | - | - |
Asiatic black bear | Ursus thibetanus thibetanus | 441,215 | ASM966005v1 | GCA_009660055.1 | Full genebuild | - | - |
Atlantic cod | Gadus morhua | 8,049 | gadMor3.0 | GCA_902167405.1 | Full genebuild | - | - |
Atlantic cod - Celtic sea | Gadus morhua | 8,049 | gadMor_Celtic | GCA_010882105.1 | Full genebuild | - | - |
Atlantic herring | Clupea harengus | 7,950 | Ch_v2.0.2v2 | GCA_900700415.2 | Full genebuild | - | - |
Atlantic salmon | Salmo salar | 8,030 | Ssal_v3.1 | GCA_905237065.2 | Full genebuild | Y | Y |
Atlantic salmon - European origin ALTA | Salmo salar | 8,030 | Ssal_ALTA | GCA_931346935.2 | Full genebuild | - | - |
Atlantic salmon - North American Atlantic Salmon | Salmo salar | 8,030 | USDA_NASsal_1.1 | GCA_021399835.1 | Full genebuild | - | - |
Atlantic salmon - North American origin Brian | Salmo salar | 8,030 | Ssal_Brian_v1.0 | GCA_923944775.1 | Full genebuild | - | - |
Australian saltwater crocodile | Crocodylus porosus | 8,502 | CroPor_comp1 | GCA_001723895.1 | Full genebuild | - | - |
Ballan wrasse | Labrus bergylta | 56,723 | BallGen_V1 | GCA_900080235.1 | Full genebuild | - | - |
Barramundi perch | Lates calcarifer | 8,187 | ASB_HGAPassembly_v1 | GCA_900066035.1 | Full genebuild | - | - |
Beluga whale | Delphinapterus leucas | 9,749 | ASM228892v3 | GCA_002288925.3 | Full genebuild | - | - |
Bengalese finch | Lonchura striata domestica | 299,123 | LonStrDom1 | GCA_002197715.1 | Full genebuild | - | - |
Bicolor damselfish | Stegastes partitus | 144,197 | Stegastes_partitus-1.0.2 | GCA_000690725.1 | Full genebuild | - | - |
Black snub-nosed monkey | Rhinopithecus bieti | 61,621 | ASM169854v1 | GCA_001698545.1 | Full genebuild | - | Y |
Blind barbel | Sinocyclocheilus anshuiensis | 1,608,454 | SAMN03320099.WGS_v1.1 | GCA_001515605.1 | Full genebuild | - | - |
Blue tilapia | Oreochromis aureus | 47,969 | ZZ_aureus | GCA_013358895.1 | Full genebuild | - | - |
Blue tit | Cyanistes caeruleus | 156,563 | cyaCae2 | GCA_002901205.1 | Full genebuild | - | - |
Blue whale | Balaenoptera musculus | 9,771 | mBalMus1.v2 | GCA_009873245.2 | Full genebuild | - | - |
Blue-crowned manakin | Lepidothrix coronata | 321,398 | Lepidothrix_coronata-1.0 | GCA_001604755.1 | Full genebuild | - | - |
Blue-ringed sea krait | Laticauda laticaudata | 8,630 | latLat_1.0 | GCA_004320025.1 | Full genebuild | - | - |
Blunt-snouted clingfish | Gouania willdenowi | 441,366 | fGouWil2.1 | GCA_900634775.1 | Full genebuild | - | - |
Bolivian squirrel monkey | Saimiri boliviensis boliviensis | 39,432 | SaiBol1.0 | GCA_000235385.1 | Full genebuild | - | Y |
Bonobo | Pan paniscus | 9,597 | panpan1.1 | GCA_000258655.2 | Full genebuild | - | Y |
Brazilian guinea pig | Cavia aperea | 37,548 | CavAp1.0 | GCA_000688575.1 | Full genebuild | - | - |
Brown trout | Salmo trutta | 8,032 | fSalTru1.1 | GCA_901001165.1 | Full genebuild | - | - |
Budgerigar | Melopsittacus undulatus | 13,146 | bMelUnd1.mat.Z | GCA_012275295.1 | Full genebuild | - | - |
Burrowing owl | Athene cunicularia | 194,338 | athCun1 | GCA_003259725.1 | Full genebuild | - | - |
Burton's mouthbrooder | Haplochromis burtoni | 8,153 | AstBur1.0 | GCA_000239415.1 | Full genebuild | - | - |
Bushbaby | Otolemur garnettii | 30,611 | OtoGar3 | GCA_000181295.3 | Full genebuild | - | - |
C.intestinalis | Ciona intestinalis | 7,719 | KH | GCA_000224145.1 | Full genebuild | Y | Y |
C.savignyi | Ciona savignyi | 51,511 | CSAV 2.0 | - | Full genebuild | - | - |
Caenorhabditis elegans (Nematode, N2) | Caenorhabditis elegans | 6,239 | WBcel235 | GCA_000002985.3 | Import | - | Y |
California sea lion | Zalophus californianus | 9,704 | mZalCal1.pri | GCA_009762305.1 | Full genebuild | - | - |
Canada lynx | Lynx canadensis | 61,383 | mLynCan4_v1.p | GCA_007474595.1 | Full genebuild | - | - |
Cat | Felis catus | 9,685 | Felis_catus_9.0 | GCA_000181335.4 | Full genebuild | Y | Y |
Central bearded dragon | Pogona vitticeps | 103,695 | pvi1.1 | GCA_900067755.1 | Full genebuild | - | - |
Chacoan peccary | Catagonus wagneri | 51,154 | CatWag_v2_BIUU_UCD | GCA_004024745.2 | Full genebuild | - | - |
Channel bull blenny | Cottoperca gobio | 56,716 | fCotGob3.1 | GCA_900634415.1 | Full genebuild | - | - |
Channel catfish | Ictalurus punctatus | 7,998 | ASM400665v3 | GCA_004006655.3 | Full genebuild | - | Y |
Chicken | Gallus gallus | 9,031 | bGalGal1.mat.broiler.GRCg7b | GCA_016699485.1 | Full genebuild | Y | Y |
Chicken (Red Jungle fowl) | Gallus gallus | 9,031 | GRCg6a | GCA_000002315.5 | Full genebuild | Y | Y |
Chicken (paternal White leghorn layer) | Gallus gallus | 9,031 | bGalGal1.pat.whiteleghornlayer.GRCg7w | GCA_016700215.2 | Full genebuild | - | - |
Chilean tinamou | Nothoprocta perdicaria | 30,464 | notPer1 | GCA_003342845.1 | Full genebuild | - | - |
Chimpanzee | Pan troglodytes | 9,598 | Pan_tro_3.0 | GCA_000001515.5 | Full genebuild | Y | Y |
Chinese hamster CHOK1GS | Cricetulus griseus | 10,029 | CHOK1GS_HDv1 | GCA_900186095.1 | Full genebuild | - | Y |
Chinese hamster CriGri | Cricetulus griseus | 10,029 | CriGri_1.0 | GCA_000223135.1 | Full genebuild | - | Y |
Chinese hamster PICR | Cricetulus griseus | 10,029 | CriGri-PICRH-1.0 | GCA_003668045.2 | Full genebuild | - | - |
Chinese medaka | Oryzias sinensis | 183,150 | ASM858656v1 | GCA_008586565.1 | Full genebuild | - | - |
Chinese softshell turtle | Pelodiscus sinensis | 13,735 | PelSin_1.0 | GCA_000230535.1 | Mixed strategy build | - | - |
Chinook salmon | Oncorhynchus tshawytscha | 74,940 | Otsh_v2.0 | GCA_018296145.1 | Full genebuild | - | - |
Climbing perch | Anabas testudineus | 64,144 | fAnaTes1.3 | GCA_900324465.3 | Full genebuild | - | - |
Clown anemonefish | Amphiprion ocellaris | 80,972 | ASM2253959v1 | GCA_022539595.1 | Full genebuild | - | - |
Coelacanth | Latimeria chalumnae | 7,897 | LatCha1 | GCA_000225785.1 | Full genebuild | - | - |
Coho salmon | Oncorhynchus kisutch | 8,019 | Okis_V2 | GCA_002021735.2 | Full genebuild | - | - |
Collared flycatcher | Ficedula albicollis | 59,894 | FicAlb1.5 | GCA_000247815.2 | Full genebuild | Y | - |
Common canary | Serinus canaria | 9,135 | SCA1 | GCA_000534875.1 | Full genebuild | - | - |
Common carp | Cyprinus carpio carpio | 630,221 | Cypcar_WagV4.0 | GCA_905221575.1 | Full genebuild | - | Y |
Common carp german mirror | Cyprinus carpio | 7,962 | German_Mirror_carp_1.0 | GCA_004011555.1 | Full genebuild | - | - |
Common carp hebao red | Cyprinus carpio | 7,962 | Hebao_red_carp_1.0 | GCA_004011595.1 | Full genebuild | - | - |
Common carp huanghe | Cyprinus carpio | 7,962 | Hunaghe_carp_2.0 | GCA_004011575.1 | Full genebuild | - | - |
Common kestrel | Falco tinnunculus | 100,819 | FalTin1.0 | GCA_010332995.1 | Full genebuild | - | - |
Common snapping turtle | Chelydra serpentina | 8,475 | Chelydra_serpentina-1.0 | GCA_007922165.1 | Full genebuild | - | - |
Common wall lizard | Podarcis muralis | 64,176 | PodMur_1.0 | GCA_004329235.1 | Full genebuild | - | - |
Common wombat | Vombatus ursinus | 29,139 | bare-nosed_wombat_genome_assembly | GCA_900497805.2 | Full genebuild | - | - |
Coquerel's sifaka | Propithecus coquereli | 379,532 | Pcoq_1.0 | GCA_000956105.1 | Full genebuild | - | Y |
Cow | Bos taurus | 9,913 | ARS-UCD1.3 | GCA_002263795.3 | Full genebuild | Y | Y |
Crab-eating macaque | Macaca fascicularis | 9,541 | Macaca_fascicularis_6.0 | GCA_011100615.1 | Full genebuild | Y | - |
Damara mole rat | Fukomys damarensis | 885,580 | DMR_v1.0 | GCA_000743615.1 | Full genebuild | - | - |
Dark-eyed junco | Junco hyemalis | 40,217 | ASM382977v1 | GCA_003829775.1 | Full genebuild | - | - |
Daurian ground squirrel | Spermophilus dauricus | 99,837 | ASM240643v1 | GCA_002406435.1 | Full genebuild | - | - |
Degu | Octodon degus | 10,160 | OctDeg1.0 | GCA_000260255.1 | Full genebuild | - | - |
Denticle herring | Denticeps clupeoides | 299,321 | fDenClu1.2 | GCA_900700375.2 | Full genebuild | - | - |
Dingo | Canis lupus dingo | 286,419 | ASM325472v1 | GCA_003254725.1 | Full genebuild | - | - |
Dog | Canis lupus familiaris | 9,615 | ROS_Cfam_1.0 | GCA_014441545.1 | Full genebuild | Y | Y |
Dog - Basenji | Canis lupus familiaris | 9,615 | Basenji_breed-1.1 | GCA_004886185.1 | Full genebuild | - | Y |
Dog - Boxer | Canis lupus familiaris | 9,615 | Dog10K_Boxer_Tasha | GCA_000002285.4 | Full genebuild | Y | Y |
Dog - German Shepherd | Canis lupus familiaris | 9,615 | UU_Cfam_GSD_1.0 | GCA_011100685.1 | Full genebuild | - | - |
Dog - Great Dane | Canis lupus familiaris | 9,615 | UMICH_Zoey_3.1 | GCA_005444595.1 | Full genebuild | - | Y |
Dolphin | Tursiops truncatus | 9,739 | turTru1 | - | Projection build | - | - |
Domestic yak | Bos grunniens | 30,521 | LU_Bosgru_v3.0 | GCA_005887515.1 | Full genebuild | Y | - |
Donkey | Equus asinus | 9,793 | ASM1607732v2 | GCA_016077325.2 | Full genebuild | - | - |
Drill | Mandrillus leucophaeus | 9,568 | Mleu.le_1.0 | GCA_000951045.1 | Full genebuild | - | Y |
End of preview. Expand
in Data Studio
Bio-MCP-Data
A repository containing biological datasets that will be used by BIO-MCP MCP (Model Context Protocol) standard.
About
This repository hosts biological data assets formatted to be compatible with the Model Context Protocol, enabling AI models to efficiently access and process biological information. The data is managed using Git Large File Storage (LFS) to handle large biological datasets.
Purpose
- Provide standardized biological datasets for AI model training and inference
- Enable seamless integration with MCP-compatible AI agents
- Support research in computational biology, genomics, and bioinformatics
Usage
To clone this repository including the LFS data:
git lfs install
git clone https://huggingface.co/datasets/longevity-genie/bio-mcp-data
Alternatively, you can clone using SSH:
git lfs install
git clone [email protected]:datasets/longevity-genie/bio-mcp-data
Data Format
The datasets in this repository store datasets used by our MCP server which enable structured data access for AI systems. This standardization facilitates:
- Consistent data integration across different AI models
- Improved context handling for biological information
- Enhanced tool access for AI agents working with biological data
Contributing
Contributions to this dataset collection are welcome. Please follow standard Git LFS practices when adding new biological data files.
License
This project is licensed under the MIT License - see the license information above for details.
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